Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq6932 127 1e-24 seq6747 107 1e-18 seq4418 107 1e-18 >seq6932 Length=2340 Score = 127 bits (140), Expect = 1e-24 Identities = 631/984 (64%), Gaps = 33/984 (3%) Strand=Plus/Plus Query 5560 CTGTAATCCACCACACCGTCTTCCCAAGTGCCTGCAATCTTGTCG-GTCGCCACACCGGT 5618 |||||||| ||||| ||||||| |||||| ||| | | ||| || || || || Sbjct 479 CTGTAATCAACCACTCCGTCTTGCCAAGTACCTTTGA-CAGGTCCAGTAGCGTTGCCTGT 537 Query 5619 GAATACATTGTTGTTCACCTGGTCGTGCACTCCGGACCACCCACGACCGTACATGGCTAC 5678 ||| | |||||| | | || || || || | ||| |||||||| |||||||| || Sbjct 538 GAAGGGAATGTTGTCTTCGTAATCATGAACGCCAGTCCAACCACGACCATACATGGCAAC 597 Query 5679 TCCCACAATTAGCTTCCTCGACTCGACGCTCTGATTTAGCAGACGCCTGACGGAAAAATC 5738 || || | | |||| | | | || | ||| | || | || || || Sbjct 598 ACCTACTACAATCTTCTTAGGATTCACTCCCTGTGCCAACAAGTATTTTACTCCGAAGTC 657 Query 5739 GGTCGTGTACGTTTCGCCTGGGT-TCCACGATGGAGCGAACAGAGGTGTCTGGTGTCCCA 5797 | ||||| ||||| | |||| |||| | || ||| ||| ||||| || ||||| | Sbjct 658 AGATGTGTAAGTTTC-CTTGGGACTCCATGCAGGCGCGTACAATGGTGTTTGATGTCCAA 716 Query 5798 GATCCGTCAAC-GACCAGGCACCCTTGTAATCGTACGTCATGACAAATATGTGATCAAGG 5856 || ||| |||||||| |||||| | || || |||| | || || ||||| | Sbjct 717 GAGTA-TCATTTGACCAGGCTCCCTTGAAGTCATAACTCATCAAGAAAATATGATCCATA 775 Query 5857 TATTTTTGTGCGGTGGCGTAGTCGACGACGTCGATCTTGTCGTGTCCCGCGCCGACGGCG 5916 || ||||| || || ||||||| || || | ||| || || ||| | || | || Sbjct 776 TAATTTTGAGCCTTGCCGTAGTCAACAACTTGGATTTTATCCCATCCAGAGCTAATAGCA 835 Query 5917 CTCGTCAACT-GTAGCCGTCTACCCCGCTTCTCGCCCAACTCATCAAGCATCACGCGAAG 5975 || || | ||| | |||| ||| | | |||||| |||||| | || | Sbjct 836 GAAGTTAATTCGTATTTCT-TACCATTCTTAGCTGAGAGCTCATCGAGCATCTCACGTAA 894 Query 5976 TTCCCGCAGCAAAAGAGTGTAGGTGTTGCGATCCACCTCGGCATTACCCAACACAGAATT 6035 ||| || |||| || | | ||| | | ||| |||| | ||| || Sbjct 895 TTCTTTCATCAAACTTACATAACAATCACCATCTTC-TGGGC--TACCGAGATCAGGGTT 951 Query 6036 GGCACCCTTTCCACCCGGAAACTCCCAGTCGATGTCCACTCCGTCAAAGAACTTCCAGGT 6095 ||||| || ||||| || |||||||| ||||| || || || |||||||| ||||| || Sbjct 952 AGCACCTTTACCACCAGGGAACTCCCAATCGATATCAACACCATCAAAGAATTTCCATGT 1011 Query 6096 CTCCAGAAACTCGCGGACGCTTGTGAC-GAACACCTCACG----CTTAGA---GTCATCG 6147 |||||||| || |||| | ||| || | |||||| |||| | Sbjct 1012 TAGAAGAAACTCCTTAAC-----TGACTGCACAAATCGTGTTCTCTTAGATTTGTCAAC- 1065 Query 6148 TTCATGAAATAA-AACGGATCGCTCAACGTCCACCCCCCTATGGATGGTAGGACCGTCAA 6206 | | ||| || || |||||| | ||||||||| || || || || || | | |||| Sbjct 1066 -TAA--AAAGAAGAAAGGATCGGCGAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAA 1122 Query 6207 CGAGGGGTTGTGACGTTTGATGGCCATCAGCTGGCCAAAGTTACCCTTGTACTCTTCGTT 6266 ||| | |||| | | ||| | ||||||||||| || ||||| ||||| Sbjct 1123 TTCAGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTT 1182 Query 6267 GTACGCCTCAACACCTTTCTGTGGTTTTTGCAACGCGGCCCAGATGTCGTGAATACTTAC 6326 ||| | ||||| ||||||||||| || || ||||| ||||| || || Sbjct 1183 CCACGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGAC 1242 Query 6327 CTTGAAGTCATCGCGACCAGCGCAGGATTTCTGTAGCGCCTCAAAG--GAATTGGGAATC 6384 |||||||| || || || ||||| ||| || || | || | || | ||| Sbjct 1243 TTTGAAGTCCTCACGGCCGCTACAGGACCGCTGCAGTGCTTGGAAACTGCCTTCG--ATC 1300 Query 6385 TGCTTGAGGGCGTCGTTTATGCCGCTACCACCACAAATTGGAATGAACCCGTACAGCAGG 6444 | || | | ||| |||||||| ||| || ||||||||||| || || || |||| Sbjct 1301 TCTTTTAAGCTGTCATTTATGCCATCACCGCCGCAAATTGGAATAAAGCCATAGAGCAAA 1360 Query 6445 TGCGTCAGATTAGGTATTGGTACCTTGTCAATGGGAAACTGTCTGCCATACACTCCCCAC 6504 || || ||||||||||| |||| || | ||| || | ||| ||| || ||||| Sbjct 1361 TGAGTAAGATTAGGTATAGGTATACGATCCACGGGGAATTTTCTAGGATAGACACCCCAT 1420 Query 6505 TCCACGAAATACGCACCGACGACT 6528 || ||||| || || || || ||| Sbjct 1421 TCTACGAAGTAGGCGCCTACAACT 1444 >seq6747 Length=1699 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||||| || || || |||||||| ||||| || || |||| | || ||| Sbjct 1341 ACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCTTCC 1400 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 | ||||||||| |||||||| || || ||||| || |||| | ||||| ||||| | Sbjct 1401 AATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCTTTGTCTTGG 1460 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 ||||| ||| || | | || | ||| || || || || | || ||||||||| Sbjct 1461 ATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGAGTAATGGTCTTT 1520 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||| || ||||| |||||||| Sbjct 1521 CCAGTTAGGGTTTTAACAAAAATCTGCAT 1549 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| ||||||||||| || ||||| | || |||| |||||||| ||||| || || Sbjct 1131 TCCTTTTGAATGTTATAATCAGATAGTGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAA 1190 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || | ||| |||||| | || | || || ||||| | || ||| || ||| | Sbjct 1191 ATGAGCCTTTGTTGGTCTGGGGGAATACCTTCTTTGTCTTGGATCTTTGCCTTCACGTTT 1250 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || | || || || | ||| ||||| ||||| || || ||||| ||| Sbjct 1251 TCAATAGTGTCCGATGGTTCTACCTCTAAGGTGATGGTTTTTCCTGTAAGAGTCTTAACA 1310 Query 34967 AAGATCTGCAT 34977 ||||||||||| Sbjct 1311 AAGATCTGCAT 1321 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||| | ||| ||| |||||||| || ||||| || || | || |||| ||| Sbjct 657 ACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAGAGAGTACGACCATCCTCC 716 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || ||||| || || || || || ||||| || ||| | || | ||||||||||| | | Sbjct 717 AGCTGCTTACCAGCAAAAATTAGACGTTGTTGATCTGGGGGAATACCCTCCTTGTCTTGT 776 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || ||| || | | || | || | || || || | || || || || Sbjct 777 ATCTTGGCTTTAACATTTTCAATAGTGTCTGATGGTTCCACTTCTAATGTGATAGTTTTC 836 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| |||||||||||||||||||| Sbjct 837 CCTGTGAGTGTCTTTACAAAGATCTGCAT 865 >seq4418 Length=3433 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| ||||| | | ||| |||| ||| | || ||||||||||| |||||||| | Sbjct 406 TTCCACCCCTAAGACGCAGCACCAAGTGCAAAGTCGATTCCTTCTGAATATTATAGTCTG 347 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || |||| |||| |||||||||||||||||||| |||| || ||| |||||| | | Sbjct 346 ACAGTGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAAATCAATCTTTGTTGGTCTGGAG 287 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || |||||||| | || ||| || || | | || | ||| || || | Sbjct 286 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTAACATTTTCGATTGTGTCAGATGCTTCCA 227 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | || || || || || || || || || ||||| || ||||| Sbjct 226 CTTCTAAAGTAATAGTTTTGCCAGTCAGTGTTTTAACAAAAATTTGCAT 178 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| ||||| | | ||| || | ||| | || || || ||||| ||||| || | Sbjct 634 TTCCACCCCTTAGACGCAGAACTAAGTGCAAAGTAGATTCTTTTTGAATATTATAATCAG 575 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 |||| |||| |||| |||| || || |||||||| ||||||| || |||||| | | Sbjct 574 ATAGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAAATCAGTCTCTGTTGGTCTGGAG 515 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || |||||||| | |||||| || || | |||| | ||| || || | Sbjct 514 GAATACCTTCCTTGTCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCA 455 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | || || ||||| || || || ||||||||||| || ||||| Sbjct 454 CTTCCAATGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324452277141737