Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq54289 168 5e-37 seq6932 158 1e-33 seq47026 116 3e-21 seq4418 105 5e-18 seq6747 84.2 2e-11 >seq54289 Length=786 Score = 168 bits (186), Expect = 5e-37 Identities = 232/321 (72%), Gaps = 5/321 (2%) Strand=Plus/Plus Query 103751 GACGAGTGCGGCGTGAGCGCGCTGCCGTCCACCAACGCCTGCGTG-CGCATGCCCGGCCC 103809 || || ||||| ||| |||||| ||| |||| | || ||| |||||||||| ||| Sbjct 1 GATGAATGCGGGGTGCGCGCGC--CCG--CACCCGCACCCGCGCCACGCATGCCCGACCC 56 Query 103810 CGCGCACCCTCGGTTCGCCTCCGAGGCCTCAAGGTTACAAACTTTTAAGGATTGGCCCCG 103869 || |||| | || | ||| ||| |||| | | | | | || | |||||||| || Sbjct 57 CGTGCACGCGCGCTACGCTTCCAAGGCGGCTCGCATGCGCAGCTTCAGCGATTGGCCTCG 116 Query 103870 GAGTCTGAAACAGAAACCGGAGAAGATGGCCGAAGCCGGATTCTACTACACCGGCCACAG 103929 || |||| || ||||| ||| | | ||||| || ||||||| |||||||||||| | Sbjct 117 CAGCATGAAGCAAAAACCCGAGGAACTCGCCGAGGCGGGATTCTTCTACACCGGCCAGGG 176 Query 103930 CGACAACACGAAATGCTTCTACTGCGACGGTGGTCTAAAGGATTGGGAGCACGATGATGA 103989 ||| || || || ||||||||||| || || || || ||||| |||||| |||| || | Sbjct 177 CGATAAAACTAAGTGCTTCTACTGTGATGGCGGGCTCAAGGACTGGGAGAACGACGACGT 236 Query 103990 GCCGTGGCAACAACACGCGCTTTTCTTTCGCCGTTGCGCATACGTGCTACTTGTCAAGGG 104049 ||||||| | || ||||||| | || ||| ||||| ||||| | || || ||||| Sbjct 237 GCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGGTGCGCCTACGTCCAGCTGGTAAAGGG 296 Query 104050 CCACGATTATGTACAAAAGGT 104070 || || || ||||| ||||| Sbjct 297 CCGAGAGTACGTACAGAAGGT 317 >seq6932 Length=2340 Score = 158 bits (174), Expect = 1e-33 Identities = 619/966 (64%), Gaps = 23/966 (2%) Strand=Plus/Minus Query 29073 GCGTATTTTGTAGAATGGGGCGTATATGGCCGCAACTTTCCGGTAGACAAAGTGCCGCTG 29132 || || || ||||||||||| || ||| | || || || || || | || | Sbjct 1434 GCCTACTTCGTAGAATGGGGTGTCTATCCTAGAAAATTCCCCGTGGATCGTATACCTATA 1375 Query 29133 CCCAACCTCTCGCATCTGTTGTACGGTTTCATACCTATTTGCGGCGGCGACGGGCTCAAC 29192 || || || | ||| || | || || || || || ||||||||||| || || | || Sbjct 1374 CCTAATCTTACTCATTTGCTCTATGGCTTTATTCCAATTTGCGGCGGTGATGGCATAAAT 1315 Query 29193 GACGCCCTCAAAACCATTCCCGGCAGTTTTGAGGCGCTGCAACGCTCTTGCAAGGGCCGT 29252 ||| | | ||| || |||||||| | || ||||| || || || | |||||| Sbjct 1314 GACAGCTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTGCAGCGGTCCTGTAGCGGCCGT 1255 Query 29253 TCAGATTTCAAAGTCGCTATTCACGATCCGTGGGCCGCGATACAAAAACCGCAAAAGGGC 29312 || ||||||||| | || |||||||| ||||| || |||||||||| ||||| || Sbjct 1254 GAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGA 1195 Query 29313 GTGTCTGCGTGGAACGAGCCCTACAAAGGAAACTTCGGTCAGCTAATGGCGGCCAAGCTG 29372 ||||| |||||||||||||||||||||| ||||| || || ||||| | || | Sbjct 1194 TTGTCTTCGTGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACAA 1135 Query 29373 GCCAATCCGCACCTCAAAATTCTGCCGTCCATCGGCGGCTGGACATTGTCCGACCC---G 29429 ||| || | | || ||||| || || || || || ||||| | |||| || Sbjct 1134 GCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTCGCCGATCCTTTC 1075 Query 29430 TTCTATTTCATGCACGACGCGGAAAAACGGCGTGTGTTTGTGGACTCGGTCAGAGAATTT 29489 |||| ||| | || | | | | | || |||||| | || || | || ||| Sbjct 1074 TTCTTTTTAGTTGACAAATCTAAGAGAACACG---ATTTGTGCAGTCAGTTAAGGAGTTT 1018 Query 29490 CTGCAGGTGTGGAAGTTTTTTGACGGCGTGGACATAGACTGGGAGTTTCCGGGTGGCAAA 29549 || | ||||| || ||||| || || || || || |||||||| || ||||| ||| Sbjct 1017 CTTCTAACATGGAAATTCTTTGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGTAAA 958 Query 29550 GGCGCCAACCCGACACTTGGCAACGGGGAGCGCGACGCCGACACGTATAACATTTTACTA 29609 || || ||||| || || | | || || | || ||| | ||| | Sbjct 957 GGTGCTAACCCTGATCTCGGTAGCCCAGA---AGATGGTGATTGTTATGTAAGTTTGATG 901 Query 29610 AAGGAATTGCGCGCAATGATGGACGAGTTACAATTGCAAACGGGCAAAACGTACGAGTTG 29669 || ||||| || | ||| | || ||| | | | | || || | ||||| || Sbjct 900 AAAGAATTACGTGAGATGCTCGATGAGCTCTCAGCTAAGAATGGTAAGAAATACGAATTA 841 Query 29670 ACAAGCGCAATCAGTTCCGGACATGACAAGATTGCTGTAGTTAAATACGACGCTGCGCAA 29729 || || || || || ||| || || || || ||| | |||| | || ||| Sbjct 840 ACTTCTGCTATTAGCTCTGGATGGGATAAAATCCAAGTTGTTGACTACGGCAAGGCTCAA 781 Query 29730 AAGTTTCTCGATAAAATATTCCTCATGAGCTACGATTTTAAAGGCGCGTGGTCAAACACC 29789 || | | | ||| | || ||| | ||||| || || || || || || |||||||| Sbjct 780 AATTATATGGATCATATTTTCTTGATGAGTTATGACTTCAAGGGAGCCTGGTCAAA---T 724 Query 29790 GAT----TTGGGCTACCAAACTACTCTCTACGCGCCGAGTTGGAACCCAAACGAACTGTA 29845 ||| |||| | | ||||| | | |||||||| |||| || || ||| || Sbjct 723 GATACTCTTGGAC-ATCAAACACCATTGTACGCGCCTGCATGGAGTCCCAAGGAAACTTA 665 Query 29846 CAACACGGACCACGCCGTTAAGTTGCTCACGAACCAGGGCGTGGACCCGCGCAAAATTAT 29905 || | ||| || || || | | | ||||| ||| | || || ||| | Sbjct 664 CACATCTGACTTCGGAGTAAAATACTTGTTGGCACAGGGAGTGAATCCTAAGAAGATTGT 605 Query 29906 TGTGGGCGTCGCCATGTACGGCCGCGGTTGGACAGGCGTGTCGGGTTATGACGGTGACAA 29965 || || || |||||||| || || |||||||| ||||| || | || ||| ||||| Sbjct 604 AGTAGGTGTTGCCATGTATGGTCGTGGTTGGACTGGCGT-TC--ATGATTACGAAGACAA 548 Query 29966 CTAT---TTTACGGGCACAGCTGCTGGGCCCGTGACCGGCACTTGGGAAGACGGCGTTGT 30022 | | || || |||| ||| |||| || || | || |||||| ||||||| || || Sbjct 547 CATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGTACTTGGCAAGACGGAGTGGT 488 Query 30023 CGACTA 30028 || || Sbjct 487 TGATTA 482 >seq47026 Length=2159 Score = 116 bits (128), Expect = 3e-21 Identities = 105/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 103568 AACGGGTTCTTCTACTTGGGCCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGAG 103627 ||||| |||| ||| ||||||||||||| ||||| |||||||||||||| ||||| || Sbjct 1959 AACGGCTTCTATTACCTGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAA 2018 Query 103628 ATTATGCGCTGGGAGGAGGGCGACGACCCGGCTCGCGATCATCAGAGGTGGGCGCCGCAG 103687 |||||| |||| | ||||||||| || || || || || ||||||||||| ||| Sbjct 2019 ATTATGAAATGGGTTGCGGGCGACGATCCCGCCAAGGACCACCAAAGGTGGGCGCCCCAG 2078 Query 103688 TGTCCGTTCCTG 103699 || || |||||| Sbjct 2079 TGCCCCTTCCTG 2090 >seq4418 Length=3433 Score = 105 bits (116), Expect = 5e-18 Identities = 164/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||||||||| ||||| | |||||||| || ||||| | ||| ||| || Sbjct 633 AATGCAAATTTTTGTAAAAACACTTACAGGCAAGACTATTACTCTTGAAGTTGAGCCTTC 692 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || || ||| ||| ||||| || || | ||| || || Sbjct 693 TGATACAATTGAAAATGTTAAGGCAAAAATTCAAGATAAGGAGGGGATTCCCCCAGACCA 752 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACT 107730 ||||| ||||||| ||| || ||||| || || |||||| ||| || | |||| Sbjct 753 ACAGAGGCTTATTTTTGCAGGAAAACAACTTGAAGATGGACGC----ACACTGTCAGACT 808 Query 107731 ACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||| ||||||||||| ||||| |||||| | || | || || |||| |||| Sbjct 809 ACAATATTCAAAAGGAATCTACCTTGCACTTAGTACTACGACTGAGAGGTGGAA 862 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/217 (69%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| ||||| | || |||||||| ||||| | ||| ||| || Sbjct 178 ATGCAAATTTTTGTTAAAACACTGACTGGCAAAACTATTACTTTAGAAGTGGAAGCATCT 237 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||||| || || |||||| | || || || Sbjct 238 GACACAATCGAAAATGTTAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGACCAA 297 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACTA 107731 || ||| | |||| || || || || ||||| |||||| ||| || | ||||| Sbjct 298 CAAAGATTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGC----ACACTGTCAGACTA 353 Query 107732 CAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || ||||| ||||| || || |||||| ||||| || Sbjct 354 TAATATTCAGAAGGAATCGACTTTGCACTTGGTGCTG 390 >seq6747 Length=1699 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| ||||| |||| || || |||||||| | ||| ||| | Sbjct 1549 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACTCTGGAAGTGGAACCCTCT 1490 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | |||||| || || || ||||| ||| | || |||||| Sbjct 1489 GATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCGCCTGATCAG 1430 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||| | || || || || |||| |||| | || | | ||||||||| Sbjct 1429 CAGCGTCTTATCTTCGCTGGAAAGCAATTGGAAGACGGCCGCACTCTTTCCGACTACAAC 1370 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||||||| || ||||| | ||| |||| ||| | | || || |||| Sbjct 1369 ATTCAAAAAGAATCTACTCTTCACTTGGTATTGCGTCTTCGTGGTGGAA 1321 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || || ||||| || || | || |||| | | Sbjct 637 ATGCAGATCTTTGTTAAGACACTTACTGGGAAAACTATCACTTTGGAGGTGGAGCCATCC 578 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| ||| | || || |||||| ||||| || ||| | ||| || || Sbjct 577 GACACTATCGAAAATGTTAAGGCAAAGATCCAAGATAAGGAGGGCATTCCCCCAGACCAA 518 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| ||||||||| ||||||| | | || || ||||||||||| Sbjct 517 CAGCGTCTCATCTTTGCTGGTAAACAGTTGGAGGATGGCCGCACTCTGTCGGACTACAAC 458 Query 107736 ATTCAAAAGGAGTCTACGTTGCA 107758 || ||||| || ||||| ||||| Sbjct 457 ATCCAAAAAGAATCTACTTTGCA 435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397357528502347