Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq4418 132 8e-26 seq6747 123 4e-23 >seq4418 Length=3433 Score = 132 bits (146), Expect = 8e-26 Identities = 165/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || |||||||| | ||||| || || |||||| |||| || || | | | Sbjct 635 TGCAAATTTTTGTAAAAACACTTACAGGCAAGACTATTACTCTTGAAGTTGAGCCTTCTG 694 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| || ||||| ||| ||| || || ||||| || || |||| Sbjct 695 ATACAATTGAAAATGTTAAGGCAAAAATTCAAGATAAGGAGGGGATTCCCCCAGACCAAC 754 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || ||||||||||| |||||| | || ||| | || | |||| || |||| Sbjct 755 AGAGGCTTATTTTTGCAGGAAAACAACTTGAAGATGGACGCACACTGTCAGACTACAATA 814 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| ||||| || | || |||||| ||||| | ||||| || Sbjct 815 TTCAAAAGGAATCTACCTTGCACTTAGTACTACGACTGAGAGGTGG 860 Score = 114 bits (126), Expect = 2e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || || ||||| || || | || |||||| | | Sbjct 863 TGCAAATTTTCGTGAAAACGCTGACTGGCAAAACTATCACATTGGAAGTAGAAGCTTCTG 922 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||| || ||||| || |||||||||||||| || || |||| Sbjct 923 ATACAATAGAAAATGTCAAGGCAAAAATTCAGGACAAAGAAGGCATTCCCCCAGACCAAC 982 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | |||||||| ||||| ||| | || ||| ||||| ||| | ||||| |||| Sbjct 983 AGAGATTGATTTTTGCCGGTAAGCAACTTGAAGATGGAAGAACATTATCTGATTACAATA 1042 Query 146212 TACAAAAAGAATCGAC 146227 | || |||||||| || Sbjct 1043 TTCAGAAAGAATCTAC 1058 Score = 105 bits (116), Expect = 1e-17 Identities = 159/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || |||| ||| | || || || || || || | || || ||| | | Sbjct 407 TGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACATTGGAAGTGGAAGCTTCTG 466 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||| || ||||| ||| || ||||| ||||| || || |||| Sbjct 467 ATACAATAGAAAATGTTAAGGCAAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAAC 526 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| ||||| || || ||||| || || ||| | || || | |||||||||| Sbjct 527 AGAGACTGATTTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTATCTGATTATAATA 586 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||||||||| ||| | || ||||| | || |||| || || Sbjct 587 TTCAAAAAGAATCTACTTTGCACTTAGTTCTGCGTCTAAGGGGTGG 632 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| || | |||||| | || || ||||| |||||| | || || ||| ||| Sbjct 179 TGCAAATTTTTGTTAAAACACTGACTGGCAAAACTATTACTTTAGAAGTGGAAGCATCT- 237 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || ||||||| || || || ||| || ||||||||||| || || ||| Sbjct 238 GACACAATCGAAAATGTTAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGACCAA 297 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||| | ||||| || || || ||| | || ||| | || | |||| |||||| Sbjct 298 CAAAGATTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGCACACTGTCAGACTATAAT 357 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGT 146239 || || || ||||||||| | || || || Sbjct 358 ATTCAGAAGGAATCGACTTTGCACTTGGT 386 >seq6747 Length=1699 Score = 123 bits (136), Expect = 4e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | |||||| | || |||||||||||||| | || || ||| | Sbjct 1092 TGCAAATTTTTGTTAAAACACTTACTGGAAAAACAATTACGTTAGAAGTTGAAGCCTCTG 1033 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| |||||||||| |||||| ||| ||||| ||||| ||||| ||||| | Sbjct 1032 ACACAATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAGC 973 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || || ||||| ||||| ||||| || ||| | | || || ||||||| |||| Sbjct 972 AGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTTTGTCAGATTACAATA 913 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || ||||| || || | || || ||| | || | ||||||||| Sbjct 912 TTCAGAAAGAGTCCACCCTTCACTTGGTACTCCGTCTGCGAGGAGGTA 865 Score = 122 bits (134), Expect = 1e-22 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 |||| || || |||| ||| | ||||| ||||| || || | || || |||| || | Sbjct 864 TGCAGATCTTTGTAAAGACACTCACAGGGAAAACTATCACATTAGAAGTGGAACCATCA- 806 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || |||||| ||||||| ||| || |||||| || || || ||||| || |||||| Sbjct 805 GACACTATTGAAAATGTTAAAGCCAAGATACAAGACAAGGAGGGTATTCCCCCAGATCAA 746 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | || |||||||| ||||| || | || ||| | | || | | || || ||| Sbjct 745 CAACGTCTAATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGTACTCTCTCTGACTACAAT 686 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || || ||||| || ||| | || || |||||||| |||||||||||| Sbjct 685 ATTCAGAAAGAGTCCACTTTGCACTTGGTATTACGTCTAAGAGGAGGTA 637 Score = 120 bits (132), Expect = 5e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || | ||||||||||| || || | || ||||||| | Sbjct 1320 TGCAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACCTTAGAGGTAGAACCATCGG 1261 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| |||| || || || || ||| |||||||| ||||| || || |||| Sbjct 1260 ACACTATTGAAAACGTGAAGGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGACCAAC 1201 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| ||||||||||| || |||||| | || ||| | || || | |||||||| | Sbjct 1200 AAAGGCTCATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACACTATCTGATTATAACA 1141 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||| ||||| ||| | ||||||||||| || Sbjct 1140 TTCAAAAGGAATCTACTCTACATTTAGTATTGCG 1107 Score = 111 bits (122), Expect = 2e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 146114 TAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAA 146173 |||||| ||| |||||||||||||| || ||||||||| | || ||||| || || || Sbjct 1694 TAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAACAACGTCTTATTTTCGCGGGCAA 1635 Query 146174 ACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCA 146233 |||||||| ||| | | || | | || || || || ||||||||||| ||| | || Sbjct 1634 GCAATTAGAAGATGGTCGTACACTTTCTGACTACAACATCCAAAAAGAATCTACTTTGCA 1575 Query 146234 TTTAGTATTACGATTAAGAGGAGGTA 146259 ||||||| | || |||||||| |||| Sbjct 1574 TTTAGTACTTCGTTTAAGAGGTGGTA 1549 Score = 102 bits (112), Expect = 1e-16 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| |||| ||||| || |||||| | || || |||| | Sbjct 1548 TGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACTCTGGAAGTGGAACCCTCTG 1489 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||||||| |||||| ||| ||||| ||||| || || ||||| | Sbjct 1488 ATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCGCCTGATCAGC 1429 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || || || || || || ||||| || || | || | | || || || | Sbjct 1428 AGCGTCTTATCTTCGCTGGAAAGCAATTGGAAGACGGCCGCACTCTTTCCGACTACAACA 1369 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||||||||| ||| | || || ||||| || Sbjct 1368 TTCAAAAAGAATCTACTCTTCACTTGGTATTGCG 1335 Score = 93.3 bits (102), Expect = 7e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || ||| | || || ||||| || ||| | || || || | || Sbjct 636 TGCAGATCTTTGTTAAGACACTTACTGGGAAAACTATCACTTTGGAGGTGGAGCCATCCG 577 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| ||||||| || || || ||| ||| || |||||||| || || |||| Sbjct 576 ACACTATCGAAAATGTTAAGGCAAAGATCCAAGATAAGGAGGGCATTCCCCCAGACCAAC 517 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | ||||| ||||| |||||||| || || ||| | || | | || || || | Sbjct 516 AGCGTCTCATCTTTGCTGGTAAACAGTTGGAGGATGGCCGCACTCTGTCGGACTACAACA 457 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTA 146240 | ||||||||||| ||| | ||||||||| Sbjct 456 TCCAAAAAGAATCTACTTTGCATTTAGTA 428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783095211477160