Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq99942 86.0 8e-12 seq99467 82.4 1e-10 seq71556 82.4 1e-10 >seq99942 Length=4096 Score = 86.0 bits (94), Expect = 8e-12 Identities = 123/167 (74%), Gaps = 10/167 (6%) Strand=Plus/Plus Query 192954 TATCCACAAAAACCCCTTGTTACCACA-GATAT-TGCAAAATTTAATAAATTAGACGATT 193011 |||||||| || ||||| || || ||| ||| | || || ||||| | ||||| ||| Sbjct 2438 TATCCACATAAGCCCCTGGTCACAACAAGATCTATGGAATATTTACGAT-TTAGAGAATT 2496 Query 193012 ATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGTTATAATCAAGAAG 193071 || |||||| ||| |||||||||| || || || ||||| || |||||||||| Sbjct 2497 G-CCTGCTGGTATCAATTCTATTGTTGCAATTTTATGTTACACTGGATACAATCAAGAAG 2555 Query 193072 ACAGTATTATTTTAAATAAAGCTT---CTATTGAAAGAGGATTATTT 193115 | ||| | ||||||||| |||| || | ||||||||||| ||| Sbjct 2556 ATAGTGTCATTTTAAAT---GCTTCAGCTGTCGAAAGAGGATTCTTT 2599 >seq99467 Length=3587 Score = 82.4 bits (90), Expect = 1e-10 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 51957 ACATTTAAAATGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAA 52016 |||||| ||||||||| | ||| ||||||||||||||||||| || || ||| Sbjct 557 ACATTTCGTATGAATTTGAGTTGCACTTCGCCATATAATGCTGATTTTGACGGCGACGAA 616 Query 52017 ATGAATTTACATGTTCCTCAATCATATGGA 52046 |||||||||||||| |||||||| |||||| Sbjct 617 ATGAATTTACATGTACCTCAATC-TATGGA 645 >seq71556 Length=578 Score = 82.4 bits (90), Expect = 1e-10 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 168653 AGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGA 168712 ||||||| | || || ||||||| ||||||||||||||| |||||| ||||| |||| Sbjct 53 AGGTGATCTTGGGCCTGTTTATGGCTTTCAATGGAGACATAGTGGAGCTAAATATGTTGA 112 Query 168713 CTGTGATACAGATTACACCGGACAAGGAGTAGACCAATTAAGTCAAACTATAAATACT 168770 | | ||| |||| | ||||||||| | || ||| || | | | |||||||||| Sbjct 113 TGCTAAAACAAATTATGCAGGACAAGGAATTGATCAAATACATAACATTATAAATACT 170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632696254886440