Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq6932 235 5e-57 seq6747 127 2e-24 seq4418 100 3e-16 >seq6932 Length=2340 Score = 235 bits (260), Expect = 5e-57 Identities = 471/684 (69%), Gaps = 22/684 (3%) Strand=Plus/Plus Query 19020 GGGTTAGCGCCATTGCCGCCTGGAAACTCCCAATCAATATCGACGCCATCGAAGAATTTC 19079 |||||||| || || || || || ||||||||||| ||||| || ||||| ||||||||| Sbjct 947 GGGTTAGCACCTTTACCACCAGGGAACTCCCAATCGATATCAACACCATCAAAGAATTTC 1006 Query 19080 CACGTTTCTAGATACTCTTGGACTGAATCGATAAA-CGTCTGCCGTACGATCTTGTCGTG 19138 || ||| ||| |||| | ||||| | | ||| ||| | | | ||| ||||| Sbjct 1007 CATGTTAGAAGAAACTCCTTAACTGACTGCACAAATCGTGTTCTCTTAGAT-TTGTCAAC 1065 Query 19139 CATATGGTAAAATGGGTCCGAAAGTGTCCAGCCCCCGATCGAAGGTAGCACTTTTAGATG 19198 | | | | || || || | || ||||| || || || || || || | || | | Sbjct 1066 TAAAAAGAAGAAAGGATCGGCGAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAATTC 1125 Query 19199 AGGGTTCGCCAATTTGGCTGCCATAAGTTGGCCAAAGTTGCCTTTGTACGGTTCGTTCCA 19258 |||| || ||| || ||| | ||||||||||||||||||||| || |||||||| Sbjct 1126 AGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCA 1185 Query 19259 TGCGCTGACA--CCTTTTTGGGGTTTCTGTATGGCCGCCCAAGGATCGTGAATGGCCACT 19316 || |||| |||||||| ||||| |||| || ||||| |||||||| || | ||| Sbjct 1186 --CGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACT 1243 Query 19317 TTGAAGTCGGCACGACCGGCACACGAACGTTGCAACGCTTCGAAACTGCCCGGGACAGTT 19376 |||||||| |||| ||| ||| || || |||| |||| ||||||||| || | Sbjct 1244 TTGAAGTCCTCACGGCCGCTACAGGACCGCTGCAGTGCTTGGAAACTGCCTTCGATCTCT 1303 Query 19377 TTGAGGGCATCATTGATGCCGTCGCCACCGCACATGGGCACGAAACCGTACAACAAATGC 19436 || | | ||||| ||||| || || ||||| || || | || || || | |||||| Sbjct 1304 TTTAAGCTGTCATTTATGCCATCACCGCCGCAAATTGGAATAAAGCCATAGAGCAAATGA 1363 Query 19437 GACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGTCGCGGATACACACCCCATTCG 19496 | | || ||| | || | ||| ||||| || | || ||||| ||||||||||| Sbjct 1364 GTAAGATTAGGTATAGGTATACGATCCACGGGGAATTTTCTAGGATAGACACCCCATTCT 1423 Query 19497 ACAAAGTATGCACCTATAATCTTGTCCGAGCGCTTT--TCGAACCGTTTATTGTTTTCGA 19554 || ||||| || |||| || ||| ||| || ||| | || | ||||| ||||| Sbjct 1424 ACGAAGTAGGCGCCTACAA-CTTTTCC-AGATGTTTGCTTAAATGGCTTATTTTTTTC-T 1480 Query 19555 GATAATCGTAGA--CGAGCGGTTCGAGATGCGATCCATCCGTGTCGGCCACGACAACTTT 19612 ||| ||| | | || || | ||| |||||| || || |||||||||| || Sbjct 1481 CCCAAT-GTATATTCCAGAGGCGGTAAATGACTTCCATCAGTATCAGCCACGACAATTT- 1538 Query 19613 AACCGGTGCGCTAG-TCGAA---CAGCCGTCGACGTTGCACAGTTTCACAGTCATATCGT 19668 ||||| | | | | ||| |||||||| | ||||| |||| ||| ||||| | || Sbjct 1539 ---CGGTGGGATCGCTGGAACTGCAGCCGTCTTCATTGCAAAGTTCCACTGTCATTTGGT 1595 Query 19669 ACTTGCCGCCCTTAGTAACGGGAA 19692 | | || || || | |||||||| Sbjct 1596 ATCTTCCACCTTTCGAAACGGGAA 1619 >seq6747 Length=1699 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | |||||| || || |||| |||||||||||||| |||||||| ||| Sbjct 1323 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAA 1382 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| |||||| | ||| || ||||| |||| ||||| |||||||| || || Sbjct 1383 AGAGTGCGGCCGTCTTCCAATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGGCGGG 1442 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 ||||| |||||||| ||||| ||||| | ||| | || || | |||||| ||| Sbjct 1443 ATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACT 1502 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | ||||| || || | ||||| || || || |||||| Sbjct 1503 TCCAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCATA 1550 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| |||||| | |||||||| | |||||||||||||| |||||||| || Sbjct 1551 CCACCTCTTAAACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAA 1610 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| | ||||| | ||| || || || | || |||||||| ||||| ||||| Sbjct 1611 AGTGTACGACCATCTTCTAATTGCTTGCCCGCGAAAATAAGACGTTGTTGATCTGGAGGA 1670 Query 137305 ATGCCTTCTTTGTC 137318 |||||||||||||| Sbjct 1671 ATGCCTTCTTTGTC 1684 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | |||||| |||||||| | |||||||| ||||| ||||| ||||| Sbjct 1095 CCGCCACGAAGACGCAATACTAAATGTAGAGTAGATTCCTTTTGAATGTTATAATCAGAT 1154 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| | ||||| |||||||| |||||| | || || | ||| || || || || Sbjct 1155 AGTGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATGAGCCTTTGTTGGTCTGGGGGA 1214 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| || ||| || | | ||| | ||||| | |||||||| Sbjct 1215 ATACCTTCTTTGTCTTGGATCTTTGCCTTCACGTTTTCAATAGTGTCCGATGGTTCTACC 1274 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || || || || | || || || || || ||||| Sbjct 1275 TCTAAGGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 1321 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | |||||||| | |||||||||||||| |||||||| || | Sbjct 411 CCACCGCGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCCGAC 470 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| || || | |||||||||||| |||| ||||| || || || || || Sbjct 471 AGAGTGCGGCCATCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGA 530 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 ||||| || || || || ||| || | | ||| | ||||| | || || || Sbjct 531 ATGCCCTCCTTATCTTGGATCTTTGCCTTAACATTTTCGATAGTGTCGGATGGCTCCACC 590 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 || | ||| | || || || || | ||| || || || || |||||| || Sbjct 591 TCCAAAGTGATAGTTTTCCCAGTAAGTGTCTTAACAAAGATCTGCATACCT 641 >seq4418 Length=3433 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| ||||||||||| || || |||||||| | ||| || ||||| ||||| Sbjct 1064 TGAAGGGTAGATTCTTTCTGAATATTGTAATCAGATAATGTTCTTCCATCTTCAAGTTGC 1005 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 ||||| ||| | |||| | || || || || || |||||||||||||| ||||||| Sbjct 1004 TTACCGGCAAAAATCAATCTCTGTTGGTCTGGGGGAATGCCTTCTTTGTCCTGAATTTTT 945 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 || | | ||| | || || | | ||||||||| | || | || ||||| ||| Sbjct 944 GCCTTGACATTTTCTATTGTATCAGAAGCTTCTACTTCCAATGTGATAGTTTTGCCAGTC 885 Query 137389 AATGTTTTTACGAATATTTGCAT 137411 | ||||| ||||| |||||||| Sbjct 884 AGCGTTTTCACGAAAATTTGCAT 862 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || | || ||||| |||||| || | |||||||||||||| || || ||||| Sbjct 632 CCACCCCTTAGACGCAGAACTAAGTGCAAAGTAGATTCTTTTTGAATATTATAATCAGAT 573 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| || | ||||| | ||||| || || | ||||| | || || || ||||| Sbjct 572 AGAGTGCGTCCA-TCTTCCAACTGTTTGCCGGCGAAAATCAGTCTCTGTTGGTCTGGAGG 514 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| ||||||| || | | ||| | || || | | ||| || Sbjct 513 AATACCTTCCTTGTCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCAC 454 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| | || | |||||||| |||| ||| ||||| || |||||||| Sbjct 453 TTCCAATGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 486635484543600