Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq6932 181 1e-40 seq6747 91.5 1e-13 seq115306 89.7 5e-13 >seq6932 Length=2340 Score = 181 bits (200), Expect = 1e-40 Identities = 339/493 (69%), Gaps = 4/493 (1%) Strand=Plus/Minus Query 24800 GCGTACTTTGTCGAGTGGGGTGTGTACCCGCGCCAGTTTCCCGTCGACAAGGTGCCCGCG 24859 || ||||| || || |||||||| || || | | || ||||| || | || Sbjct 1434 GCCTACTTCGTAGAATGGGGTGTCTATCCTAGAAAATTCCCCGTGGATCGTATACCTATA 1375 Query 24860 CCCAACCTCTCGCACTTGCTCTACGGCTTTGTGCCCATCTGCGGCGGCGCGGGCATCAAC 24919 || || || | || |||||||| |||||| | || || |||||||| | ||||| || Sbjct 1374 CCTAATCTTACTCATTTGCTCTATGGCTTTATTCCAATTTGCGGCGGTGATGGCATAAAT 1315 Query 24920 GATGCGCTAAAAACTGTGCCG-GGCAGCTTCGAGGCGCTGCAACGATCGTGCGCCGGCCG 24978 || ||| |||| | | ||||| ||| | || ||||| || || || |||||| Sbjct 1314 GACA-GCTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTGCAGCGGTCCTGTAGCGGCCG 1256 Query 24979 CGCCGACTTCAAGGTGGCCATCCACGATCCGTGGGCGGCCATACAGAAACCGCAGAAAGG 25038 | |||||||| || | ||||||||||| ||||| || |||| ||||| || ||||| Sbjct 1255 TGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGG 1196 Query 25039 CGTGTCCGCGTGGAACGAGCCGTACAAGGGCAACTTTGGCCAGCTGATGGCGCTGAAGCG 25098 |||| ||||||||||||| ||||| |||||||||||||| | ||| | || || | Sbjct 1195 ATTGTCTTCGTGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACA 1136 Query 25099 CGCCTACCCGCACCTCAAAGTGCTGCCCTCGATCGGCGGCTGGACGCTGTCCGACCCGTT 25158 ||| ||| | | || | || ||||| || || || |||||||| |||| || || Sbjct 1135 AGCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTCGCCGATCCTTT 1076 Query 25159 CTTCCACATGCACGACAAGGCGGCGCGCCAGACG-TTTATCGACTCGGTGCAAGAGTACC 25217 |||| | ||||| | | | | ||| ||| | | || || | |||| | Sbjct 1075 CTTCTTTTTAGTTGACAAATCTAAGAG-AACACGATTTGTGCAGTCAGTTAAGGAGTTTC 1017 Query 25218 TCGTCACCTGGAAGTTCTTTGACGGCGTCGACCTCGATTGGGAGTTTCCCGGCGGCAAGG 25277 | | || ||||| |||||||| || || || ||||||||||||| || || || || | Sbjct 1016 TTCTAACATGGAAATTCTTTGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGTAAAG 957 Query 25278 GCGCCAACCCGGA 25290 | || ||||| || Sbjct 956 GTGCTAACCCTGA 944 >seq6747 Length=1699 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||||||||| ||||||||||| || ||| ||| | || || | Sbjct 888 AAGTGAAGGGTGGACTCTTTCTGAATATTGTAATCTGACAAAGTGCGACCA-TCTTCCAA 946 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || || | || || |||||||| || || |||||||| || ||||| ||| Sbjct 947 TTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGAT 1006 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || ||| | | |||| ||||| | || || || || | || | ||||| || Sbjct 1007 TTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCAACTTCTAACGTAATTGTTTTTCC 1066 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| || ||||| ||||| Sbjct 1067 AGTAAGTGTTTTAACAAAAATTTGCAT 1093 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT-GGACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| |||||||| || | || ||| | ||||| |||||||| || Sbjct 669 GTGGACTCTTTCTGAATATTGTAGTCAGAGAGAGTACGACCA-TCCTCCAGCTGCTTACC 727 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| || || || || || || || || || |||||||| ||| || |||| Sbjct 728 AGCAAAAATTAGACGTTGTTGATCTGGGGGAATACCCTCCTTGTCTTGTATC-TTGGCTT 786 Query 133583 GAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||| | || ||||| || | |||| ||||| || || || | Sbjct 787 TAACATTTTCAATAGTGTCTGATGGTTCCACTTCTAATGTGATAGTTTTCCCTGTGAGTG 846 Query 133642 TTTTTACGAAAATCTGCAT 133660 | ||||| || |||||||| Sbjct 847 TCTTTACAAAGATCTGCAT 865 >seq115306 Length=588 Score = 89.7 bits (98), Expect = 5e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 133535 CCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAAC 133594 || ||||||||| ||||| || || || ||||| |||||| ||||| | ||| | Sbjct 182 CCTCTGCTGGTCTGGAGGAATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTCTCGAT 123 Query 133595 CGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAAT 133654 ||||| | |||||| || || | ||||| ||| || || || || ||||| |||||||| Sbjct 122 AGTGTCCGAGGGCTCGACCTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAAAT 63 Query 133655 CTGCATG 133661 ||||||| Sbjct 62 CTGCATG 56 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481532298516520