Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq48588 208 2e-48 seq99467 120 7e-22 >seq48588 Length=2845 Score = 208 bits (230), Expect = 2e-48 Identities = 432/640 (68%), Gaps = 5/640 (1%) Strand=Plus/Minus Query 110520 TCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAA 110579 |||||||| ||| ||| || || || ||| |||||||||||||| |||| || | ||| Sbjct 1873 TCTTGCTTCCTTATAGCTATGAAAGACGATAGTATTGAAGGTATTTTTGATACTTTAAAA 1814 Query 110580 GAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGC 110639 || ||| | ||||||||| | || || || ||| | || ||| || | Sbjct 1813 CAATGTGCATTAATTTCTAAATCTGCCGGTGGCATAGGTTTACATACACATTGCATCAGA 1754 Query 110640 TCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTA 110699 | | || | |||| || | || || | ||||| ||| || || |||||||| Sbjct 1753 GCCCAGGGGTCTTATATAGCTGGTACTAATGGGGTTTCAAATGGTCTAGTGCCAATGTTG 1694 Query 110700 AGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCA 110756 ||||| | |||| | ||||| | |||||| |||||||||| || | | | || || Sbjct 1693 AGAGTGTACAACAATACTGCCAGATATGTAGATCAAGGTGGAAACAAACGTCCCGGTGCA 1634 Query 110757 TTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAA 110816 ||||| || || | || ||||||||| | || |||||||| ||| |||| | || Sbjct 1633 TTTGCAATTTACTTAGAGCCTTGGCATGCGGACATATTTGAGTTCCTAGATTTAAAGAAG 1574 Query 110817 AATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGAT 110876 || ||| |||||| |||||| | || | |||||||| | ||||| ||||| Sbjct 1573 AACACAGGTAAGGAAGAAATGAGAGCAAGAGAACTGTTTTATGCCTTATGGATACCAGAT 1514 Query 110877 TTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCT 110936 | || |||||| | || || | ||| ||| ||| |||||||||||| || | Sbjct 1513 CTGTTTATGAAAAGAGTAGAAAAGGATGAAGATTGGAGTCTCATGTGTCCTCATGATTGT 1454 Query 110937 CCTGGTCTATCTGA-TGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAA 110995 ||||| || |||| ||| |||||| | || |||||||| || || | ||||||||| | Sbjct 1453 CCTGGCCTCGCTGACTGT-TATGGAGAGGAATTTGAAGAACTATATGCCAAATATGAAGA 1395 Query 110996 AGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATC 111055 |||| |||| |||||| | ||||||||| | ||| ||| | ||| | Sbjct 1394 AGAAAAACGGTTTATAAAACAAGTCAGAGCTCAAGAGTTATGGAAGTCAATTATAGAAGC 1335 Query 111056 ACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAA 111115 ||||| || ||||| || || ||||| || ||||| ||| | || | || ||| Sbjct 1334 TCAAGTGGAGACTGGTACACCATATATGTTATATAAGGATGCTTGCAACAGGAAGAGTAA 1275 Query 111116 TCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 ||||| ||| | || || ||||| | ||| ||| | ||| Sbjct 1274 TCAAAAAAATCTTGGCACTATTAAATGTAGCAATCTTTGC 1235 >seq99467 Length=3587 Score = 120 bits (132), Expect = 7e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||||| || |||||| |||| | |||||| | || ||| | |||| |||||| | Sbjct 461 CATTTGAGAGATGATGATTTGGTTATTTTCAATCGACAGCCAACTTTGCACAAAATGAGT 520 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 ||||||| ||| | ||||||||||| | | | |||||||| | ||| | ||| Sbjct 521 ATGATGGGTCACAGGGTCAAAGTATTGCCGTGGTCCACATTTCGTATGAATTTGAGTTGC 580 Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 | |||| |||||||| |||||||| || || ||||||||| | |||||||||||||| Sbjct 581 ACTTCGCCATATAATGCTGATTTTGACGGCGACGAAATGAATTTACATGTACCTCAATC 639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1182060563073603