Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4418 145 2e-29 seq6747 127 5e-24 >seq4418 Length=3433 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||||| || || ||||| ||||| |||||||| ||| |||||| ||| | ||| Sbjct 877 AAAACGCTGACTGGCAAAACTATCACATTGGAAGTAGAAGCTTCTGATACAATAGAAAAT 936 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||| ||||| || |||||||| ||| || ||| || ||| | || || Sbjct 937 GTCAAGGCAAAAATTCAGGACAAAGAAGGCATTCCCCCAGACCAACAGAGATTGATTTTT 996 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||| | ||||||||||| || || | |||||||| | |||||||| ||| Sbjct 997 GCCGGTAAGCAACTTGAAGATGGAAGAACATTATCTGATTACAATATTCAGAAAGAATCT 1056 Query 206365 ACTCTTCACCTTGTTTTGAGACT 206387 || |||||||||||| | ||||| Sbjct 1057 ACCCTTCACCTTGTTCTCAGACT 1079 Score = 127 bits (140), Expect = 5e-24 Identities = 152/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 206179 TTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || || || || || || ||||| |||||||||||| |||||| ||| | Sbjct 414 TTTTGTAAAGACACTGACTGGCAAGACTATCACATTGGAAGTGGAAGCTTCTGATACAAT 473 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| || ||| ||| |||||||| || ||||| ||| || ||| || ||||| Sbjct 474 AGAAAATGTTAAGGCAAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAACAGAGACT 533 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 || |||||||| || ||||||||||||||| | ||| | | ||||| || | || || Sbjct 534 GATTTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTATCTGATTATAATATTCAAAA 593 Query 206358 AGAGTCTACTCTTCACCTTGTTTTG 206382 ||| |||||| | ||| | ||| || Sbjct 594 AGAATCTACTTTGCACTTAGTTCTG 618 Score = 125 bits (138), Expect = 2e-23 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| || ||||| ||||||||| ||||||||| ||||| Sbjct 193 AAAACACTGACTGGCAAAACTATTACTTTAGAAGTGGAAGCATCTGACACAATCGAAAAT 252 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||||||| || ||||| ||| || ||| |||||| | || ||| Sbjct 253 GTTAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGACCAACAAAGATTGATTTTC 312 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||| ||||||||||| | || || | || || || | ||||| || || Sbjct 313 GCCGGAAAGCAACTGGAAGATGGACGCACACTGTCAGACTATAATATTCAGAAGGAATCG 372 Query 206365 ACTCTTCAC 206373 ||| | ||| Sbjct 373 ACTTTGCAC 381 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 204755 AGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTT 204814 ||||| | |||||||||||| ||||| |||||||| | ||| || |||| || || ||| Sbjct 1079 AGTCTGAGAACAAGGTGAAGGGTAGATTCTTTCTGAATATTGTAATCAGATAATGTTCTT 1020 Query 204815 CCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843 |||||||| || ||||| ||||| || || Sbjct 1019 CCATCTTCAAGTTGCTTACCGGCAAAAAT 991 >seq6747 Length=1699 Score = 127 bits (140), Expect = 5e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || ||||| || || ||| ||||||||||| ||||| Sbjct 1546 CAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACTCTGGAAGTGGAACCCTCTGAT 1487 Query 206233 ACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| ||||| || ||| || ||||| ||||| || || ||| || || Sbjct 1486 ACTATTGAAAATGTAAAAGCTAAA-ATCCAAGACAAAGAGGGCATCCCGCCTGATCAGCA 1428 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | ||||||||||| |||||||| |||||||| || | ||| | |||| |||||| | Sbjct 1427 GCGTCTTATCTTCGCTGGAAAGCAATTGGAAGACGGCCGCACTCTTTCCGACTACAACAT 1368 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| |||||||||||| | || ||| | ||||| Sbjct 1367 TCAAAAAGAATCTACTCTTCACTTGGTATTGCGTCTTCG 1329 Score = 116 bits (128), Expect = 9e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || |||||||| || || || ||||| ||| ||||||||| | ||| Sbjct 1078 AAAACACTTACTGGAAAAACAATTACGTTAGAAGTTGAAGCCTCTGACACAATTGAAAAT 1019 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| || || ||||| ||||| || || || || || | |||||||| Sbjct 1018 GTAAAGGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAGCAGCGTCTTATCTTT 959 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| | |||||||| | ||||||||||| Sbjct 958 GCTGGTAAGCAATTGGAAGATGGTCGCACTTTGTCAGATTACAATATTCAGAAAGAGTCC 899 Query 206365 ACTCTTCAC 206373 || |||||| Sbjct 898 ACCCTTCAC 890 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || ||||||||||| ||||| || || || ||| || ||| Sbjct 1318 CAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACCTTAGAGGTAGAACCATCGGAC 1259 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| |||||| ||||| |||||||| ||| || ||| ||| Sbjct 1258 ACTATTGAAAACGTGAAGGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGACCAACAA 1199 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || || || || ||||| || |||||||||| | || | | ||||| ||| | Sbjct 1198 AGGCTCATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACACTATCTGATTATAACATT 1139 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || |||||||| || | || ||| | ||||| Sbjct 1138 CAAAAGGAATCTACTCTACATTTAGTATTGCGTCTTCG 1101 Score = 104 bits (114), Expect = 5e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || ||||| ||||||||||| ||||| || ||| Sbjct 634 CAGATCTTTGTTAAGACACTTACTGGGAAAACTATCACTTTGGAGGTGGAGCCATCCGAC 575 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| || ||| |||||| ||||| || || || ||| || ||| || Sbjct 574 ACTATCGAAAATGTTAAGGCAAAGATCCAAGATAAGGAGGGCATTCCCCCAGACCAACAG 515 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || || |||||||| ||||| | ||| || | || |||||| || Sbjct 514 CGTCTCATCTTTGCTGGTAAACAGTTGGAGGATGGCCGCACTCTGTCGGACTACAACATC 455 Query 206353 CAGAAAGAGTCTACT 206367 || ||||| |||||| Sbjct 454 CAAAAAGAATCTACT 440 Score = 93.3 bits (102), Expect = 1e-13 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || |||||||| ||||| ||||| || ||||||||| || ||| Sbjct 862 CAGATCTTTGTAAAGACACTCACAGGGAAAACTATCACATTAGAAGTGGAACCATCAGAC 803 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || ||||| || ||| ||||| || || || ||| || || || Sbjct 802 ACTATTGAAAATGTTAAAGCCAA-GATACAAGACAAGGAGGGTATTCCCCCAGATCAACA 744 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | || || || || || |||||| |||| ||||| | ||| | | || ||||| | Sbjct 743 ACGTCTAATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGTACTCTCTCTGACTACAATAT 684 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTT 206381 ||||||||||| ||| | ||| | || || Sbjct 683 TCAGAAAGAGTCCACTTTGCACTTGGTATT 654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177088552044683