Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq6932 145 7e-30 seq6747 102 8e-17 seq4418 87.8 2e-12 seq47026 86.0 6e-12 seq48588 84.2 2e-11 >seq6932 Length=2340 Score = 145 bits (160), Expect = 7e-30 Identities = 364/545 (67%), Gaps = 6/545 (1%) Strand=Plus/Minus Query 24784 GAAAATAACAAGCGTTTCGAG-AAACATCCCGATAAAATTGTAGCGGCTTACTTCGTCGA 24842 ||||| || |||| || || ||||||| || ||| |||||| || |||||||| || Sbjct 1479 GAAAAAAATAAGCCATTTAAGCAAACATCTGGA-AAAGTTGTAGGCGCCTACTTCGTAGA 1421 Query 24843 GTGGGGCGTGTATCAGCGGCAGTTTTCCGTCGACAAAGTGCCCGCGCCCAATTTGTCGCA 24902 ||||| || |||| | | || |||| || | || || ||| | | || Sbjct 1420 ATGGGGTGTCTATCCTAGAAAATTCCCCGTGGATCGTATACCTATACCTAATCTTACTCA 1361 Query 24903 CTTGCTATACGCTTTCGTGCCGATATGCGGCGGCGAGGGCATAAACGACGCTCTCAAAAC 24962 ||||| || | || | || || |||||||| || |||||||| ||| || |||| Sbjct 1360 TTTGCTCTATGGCTTTATTCCAATTTGCGGCGGTGATGGCATAAATGACAG-CTTAAAAG 1302 Query 24963 AGTTCCC-GGTAGTTTTGAGGCGCTGCAGCGCTCGTGCGCCGGGCGCGACGATTTTAAGG 25021 || || || ||||| | || |||||||| || || ||| || || || || || | Sbjct 1301 AGATCGAAGGCAGTTTCCAAGCACTGCAGCGGTCCTGTAGCGGCCGTGAGGACTTCAAAG 1242 Query 25022 TAACCATTCACGACCCCTGGGCCGCCATCCAGAAACCGCAGAAAGGCGTCTCCACTTGGA 25081 | | || ||||| || ||||| || | || ||||| || ||||| | || | |||| Sbjct 1241 TCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGATTGTCTTCGTGGA 1182 Query 25082 ACGAGCCGTACAAAGGCAACTTTGGACAATTAATGGGCCTGAAATTAGCTAATCCACACT 25141 ||||||| ||||||||||||||||| ||||||||| || ||| ||| || | | Sbjct 1181 ACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACAAGCCCGCCCTGAAT 1122 Query 25142 TGAAGGTGCTGGCGTCGATCGGCGGCTGGACCTTGTCAGATCCATTCTTTCACATGCATG 25201 ||||| | || | || || || || ||||| | | ||||| ||||| | || Sbjct 1121 TGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTCGCCGATCCTTTCTTCTTTTTAGTTG 1062 Query 25202 ACGCGACCGTGCGTCAAACG-TTCATCGATTCCGTCGAGGACTTTCTCTTGACTTGGAAG 25260 || | | | | ||| || | | || || |||| ||||| | || ||||| Sbjct 1061 ACAAATCTAAGAG-AACACGATTTGTGCAGTCAGTTAAGGAGTTTCTTCTAACATGGAAA 1003 Query 25261 TTTTTCGACGGCGTCGACATTGACTGGGAGTTTCCGGGCGGCAAAGGGGCCAATCCTCAC 25320 || || || || || || || || |||||||| || || || ||||| || || ||| | Sbjct 1002 TTCTTTGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGTAAAGGTGCTAACCCTGAT 943 Query 25321 GTCGG 25325 |||| Sbjct 942 CTCGG 938 >seq6747 Length=1699 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || |||||||| ||||||||||| || || || ||| || | ||||||||| | | Sbjct 444 GATTCTTTTTGGATGTTGTAGTCCGACAGAGTGCGGCCATCCTCCAACTGTTTACCAGCA 503 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||||||||| ||||| || ||||| || ||||| || ||| || | Sbjct 504 AAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTATCTTGGATCTTTGCCTTAACA 563 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||| |||| |||||||| || | || | ||||| ||||| || || || Sbjct 564 TTTTCGATAGTGTCGGATGGCTCCACCTCCAAAGTGATAGTTTTCCCAGTAAGTGTCTTA 623 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 624 ACAAAGATCTGCAT 637 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | || ||||||||||||||||||||| | || || Sbjct 1335 CGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCG 1394 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | || || || | |||| |||||||| ||||| || || ||||| ||||| Sbjct 1395 TCTTCCAATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCTTTG 1454 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||| | | ||| | |||||| | || |||||||| | || | Sbjct 1455 TCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGAGTAATG 1514 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| || ||||| | ||||||||||| Sbjct 1515 GTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1549 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || ||||| || | | |||||||| ||||| |||||||| | ||||| | Sbjct 651 CGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAGAGAGTACGACCA 710 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| ||||| | | | |||||||| ||||||||||| || || || || || Sbjct 711 TCCTCCAGCTGCTTACCAGCAAAAATTAGACGTTGTTGATCTGGGGGAATACCCTCCTTG 770 Query 132029 TC-GGTAATTTTTTGTTTCAAC-TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCA 132086 || ||| | || | || ||| | ||| | ||| || | || |||||||| | || | Sbjct 771 TCTTGTA--TCTTGGCTTTAACATTTTCAATAGTGTCTGATGGTTCCACTTCTAATGTGA 828 Query 132087 GCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || || |||| || |||||||| Sbjct 829 TAGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 865 >seq4418 Length=3433 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGA 131988 || ||||| ||||| ||||| || | | ||| | | | ||||| || || ||||||| Sbjct 1055 GATTCTTTCTGAATATTGTAATCAGATAATGTTCTTCCA-TCTTCAAGTTGCTTACCGGC 997 Query 131989 ATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAA 132048 | | || | | |||||| ||||| || ||||||||||| || ||||||| || | Sbjct 996 AAAAATCAATCTCTGTTGGTCTGGGGGAATGCCTTCTTTGTCCTGAATTTTTGCCTTGAC 937 Query 132049 CTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 | ||| | ||||| | | || ||||| | || | ||||| |||||||| ||||| Sbjct 936 ATTTTCTATTGTATCAGAAGCTTCTACTTCCAATGTGATAGTTTTGCCAGTCAGCGTTTT 877 Query 132109 TATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 876 CACGAAAATTTGCAT 862 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||| || || | | || ||||||||||| || || || | || || | Sbjct 620 CGCAGAACTAAGTGCAAAGTAGATTCTTTTTGAATATTATAATCAGATAGAGTGCGTCCA 561 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||| |||| | || || | |||||| |||||||| || ||||| || Sbjct 560 TCTTCCAACTGTTTGCCGGCGAAAATCAGTCTCTGTTGGTCTGGAGGAATACCTTCCTTG 501 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||||| || | | ||| | ||||| | | |||||||| | || | Sbjct 500 TCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAATGTGATA 441 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || |||||||| || |||| ||||| ||||| Sbjct 440 GTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 406 >seq47026 Length=2159 Score = 86.0 bits (94), Expect = 6e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 115649 CGGCTTCTATTACACGGGCGTCGGTGACGAAGTGCGTTGCGCTTTCTGCAAAGTGGAGAT 115708 ||||||||||||| |||| ||| || ||||| || ||||| || || ||||| || || Sbjct 1961 CGGCTTCTATTACCTGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAAAT 2020 Query 115709 TATGAGATGGCAGCCCGGAGACGATCCATTGACGGACCACAAACGATGGGCGCCTCAGTG 115768 ||||| |||| | || |||||||| | ||||||| || | |||||||| ||||| Sbjct 2021 TATGAAATGGGTTGCGGGCGACGATCCCGCCAAGGACCACCAAAGGTGGGCGCCCCAGTG 2080 >seq48588 Length=2845 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 147090 GTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTA 147149 || |||||| || |||||||| | ||| | || || ||||| || | || |||| Sbjct 809 GTCCCACATATCATACTGGAGGATACCTTGGCTAGCTGGACTTCCTTGATATGTGCTGTA 868 Query 147150 GCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTC 147209 || || | || |||||||| || || || | || ||||| || || ||||| Sbjct 869 TGCGCCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATGCACCATAATAAATTGTTTC 928 Query 147210 GGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCAC 147269 ||||||| || |||| | |||| || || |||||||| || | || | ||| Sbjct 929 AAATATTTGTTGATTAAGGAGTATTGCTTTCTCACTTTCGTAAGGTATTCTCATCAACAC 988 Query 147270 AAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGC 147315 ||| | ||| |||| |||||| | ||| | ||||||||||| ||| Sbjct 989 AAATGTATCTGCCATACCCTGAACACCAATACCGATAGGTCGGTGC 1034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474749300474280