Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq6932 315 6e-81 seq48588 138 1e-27 seq4418 109 5e-19 seq6747 105 6e-18 >seq6932 Length=2340 Score = 315 bits (348), Expect = 6e-81 Identities = 813/1224 (66%), Gaps = 35/1224 (3%) Strand=Plus/Minus Query 59918 TGGATAAAGTCGTTGCCGCATATTTTGTCGAATGGGGTGTTTATCCTAGAAATTTTCCTG 59977 |||| ||||| || | ||| || || || ||||||||||| ||||||||||| || || | Sbjct 1450 TGGA-AAAGTTGTAGGCGCCTACTTCGTAGAATGGGGTGTCTATCCTAGAAAATTCCCCG 1392 Query 59978 TAGATCGAGTGCCCACTCCTAATCTATCGCATATTCTATACGGATTTATTCCGATATGCG 60037 | ||||| | || | |||||||| | ||| | || || || |||||||| || |||| Sbjct 1391 TGGATCGTATACCTATACCTAATCTTACTCATTTGCTCTATGGCTTTATTCCAATTTGCG 1332 Query 60038 GCGGCGACGGTATCAACGACAGTCTTAAAACC-ATAACCGGTAGTTTCGAAGCGCTTCAG 60096 |||| || || || || ||||| ||||||| || || |||||| |||| || ||| Sbjct 1331 GCGGTGATGGCATAAATGACAG-CTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTGCAG 1273 Query 60097 CGATCGTGTTCAGGTCGAGACGACTTTAAAGTATCAATTCACGATCCATGGGCCGCCGTC 60156 || || ||| || || || ||||| ||||| ||||| |||||||||||||| || | Sbjct 1272 CGGTCCTGTAGCGGCCGTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTA 1213 Query 60157 CAGAAACCCCAAAAACAAGTAACCGCTTGGAACGAACCATACAAAGGTAATTTCGGACAA 60216 || ||||| |||||| | | | | |||||||| || |||||||| || || || ||| Sbjct 1212 CAAAAACCACAAAAAGGATTGTCTTCGTGGAACGAGCCCTACAAAGGCAACTTTGGCCAA 1153 Query 60217 TTAATGGCAGCCAAACTGGCAAATCCCCACATCAAAGTGTTGCCCTCGATCGGAGGTTGG 60276 |||||| || |||| || || | | || | | ||||| || || || ||| Sbjct 1152 TTAATGTCACTAAAACAAGCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGG 1093 Query 60277 ACTCTATCCGATCCGTTCTTTTACTTTCACGATACGGATAAACGA--AAGATTTTTGTAG 60334 || || ||||||| ||||| | || || | ||| || | ||||| || || Sbjct 1092 ACGCTCGCCGATCCTTTCTTCTTTTTAGTTGACAAATCTAAGAGAACACGATTTGTGCAG 1033 Query 60335 ATTCTGTCGTGGAGTTTCTACAGACGTGGAAATTTTTCGACGGTGTCGACATCGACTGGG 60394 || || ||||||||| | || |||||||| || || ||||| || ||||| |||| Sbjct 1032 --TCAGTTAAGGAGTTTCTTCTAACATGGAAATTCTTTGATGGTGTTGATATCGATTGGG 975 Query 60395 AGTTTCCCGGCGGAAAAGGTGCCAATCCCAACGTAGGCGACGCCGAACGCGATCGCGAAA 60454 |||| || || || |||||||| || || | | || | | ||| ||| | || Sbjct 974 AGTTCCCTGGTGGTAAAGGTGCTAACCCTGATCTCGGTAGCCCAGAA---GATGGTGATT 918 Query 60455 CGTACACCATTCTGTTGAAAGATTTACGCGAGGCGCTAGATCGATTAACCCTC-GAAACG 60513 || | | || ||||||| ||||| ||| || ||||| | | ||| | | | Sbjct 917 GTTATGTAAGTTTGATGAAAGAATTACGTGAGATGC----TCGATGAGCTCTCAGCTAAG 862 Query 60514 AATCGAACG---TACGAGTTGACCAGCGCAATTAGCGCCGGCGATGACAAAATCGCCGTC 60570 ||| | | | ||||| || || || |||||| | || || |||||| || Sbjct 861 AATGGTAAGAAATACGAATTAACTTCTGCTATTAGCTCTGGATGGGATAAAATCCAAGTT 802 Query 60571 GTCGACTACACCGCTGCTCAAGAATATTTAGATTTAAtttttttGATGACGTACGATTTT 60630 || |||||| | |||||| | ||| | ||| ||||| ||||||| || || || Sbjct 801 GTTGACTACGGCAAGGCTCAAAATTATATGGATCATATTTTCTTGATGAGTTATGACTTC 742 Query 60631 AAAGGAGCCTGGTCGAATAACGATCTGGGCTATCAGACTACTCTATACGCTCCTTCGTTT 60690 || ||||||||||| ||| | ||| || |||| || | | ||||| ||| | | Sbjct 741 AAGGGAGCCTGGTCAAATGATACTCTTGGACATCAAACACCATTGTACGCGCCTGCATGG 682 Query 60691 AATCCTAAAGAACATTATACTACCGATTTTGCCGT-TCGTGCTCTACTCAAGCAAAAAGT 60749 | ||| || ||| ||| || | || || | || | || | | || ||| Sbjct 681 AGTCCCAAGGAAACTTACACATCTGACTTCGGAGTAAAATACT-TGTTGGCACAGGGAGT 623 Query 60750 CGAGAATaaaaaaaTTATTGTCGGCGTGGCCATGTACGGTCGCGGCTGGACCGGCGTAAG 60809 | ||| || ||| | || || || |||||||| ||||| || ||||| ||||| Sbjct 622 GAATCCTAAGAAGATTGTAGTAGGTGTTGCCATGTATGGTCGTGGTTGGACTGGCGTTCA 563 Query 60810 CGATTTTGTTGACGATAATAATCCATTTTCCGGAACGGCCAAGGGACCGGTCAAAGGAAC 60869 |||| || || || | ||| || | || | || | ||||| |||||||| || Sbjct 562 TGATT---ACGAAGACAACATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGTAC 506 Query 60870 ATGGGAAGACGGAGTCGTCGACTATAGAGAGATTTTCAAT-AATTTCGTC--GCCAATAA 60926 ||| |||||||||| || || || || |||||| ||| || || || | ||| Sbjct 505 TTGGCAAGACGGAGTGGTTGATTACAGGGAGATTGCGAATGAAGTTGCTCAAGGCAA--- 449 Query 60927 CCCGATGGAAT---ATTACGATTCCGTTGCAAAAGCGGCGTACGTCTTTAATAACTCGAC 60983 | ||||| ||||||| || || |||| | || ||||| | || || Sbjct 448 ---GTGGGAATTTCATTACGACAATGTCGCCCAAGCTCCTTATGTCTTCAGACCATCAAC 392 Query 60984 CGGCGAGCTCATCACTTACGACAATCCTCGGTCGGTTCTGGATAAAGCAAAATATGTATT 61043 || || || | || || |||||| || | || ||| | || || | |||||||| Sbjct 391 TGGAGACCTTGTAACCTATGACAATGCTAGATCAGTTATTGAAAAGGGTAAATATGTGAG 332 Query 61044 GGACTATAGCTTGGGTGGTTTGTTCGCTTGGGAGATCGACGCCGACAACGGATTACTTCT 61103 | | | | |||||| | || |||||||| |||||||| || ||||| || || Sbjct 331 AAATAACAAACTAGGTGGTCTCTTTGCTTGGGAAATCGACGCTGATAACGGTGATCTACT 272 Query 61104 AAACGCCATGAACAGCGGTCTCGG 61127 || |||||||||| ||||| || Sbjct 271 GAATGCCATGAACATGGGTCTTGG 248 >seq48588 Length=2845 Score = 138 bits (152), Expect = 1e-27 Identities = 663/1036 (64%), Gaps = 31/1036 (3%) Strand=Plus/Plus Query 136972 AGATGCTGATTTACTACTTGATATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTA 137031 ||||| || || ||||| || |||| || |||| ||||| | | ||| | ||| Sbjct 603 AGATGATGGTTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGAT 662 Query 137032 GTGAACGGCTCGAACGATTCGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATG 137091 || || || || || ||||| |||| || | ||| |||||||| | || || ||||| Sbjct 663 GTAAATGGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTTGGCATA 722 Query 137092 TAAGCGATCAACAATGAATTCCGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTC 137151 || ||||| | ||||| || ||||| ||| || | | || ||||| | | Sbjct 723 GGTGCTATCAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTGAGGACAGCC 782 Query 137152 CAGTTCCACAGAT-TGTTCGATTGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCG 137210 |||||||| || | ||| || ||| | | ||||| |||| |||| | | || | Sbjct 783 CAGTTCCAAAGGTCTGTAGGA----GTTTTGTCCCACATATCATACTGGAGGATACCTTG 838 Query 137211 ACTTGCAGGACTTTCTGCATAAGAATCATATGTTCCGTGCAGTTTC-GCCAGTTCAATAC 137269 || || |||||| || ||| | |||| || | | |||| || | |||| || Sbjct 839 GCTAGCTGGACTTCCTTGATATGTGCTGTATGCGCCTT-CTTTTTCTGCTAATTCACAAC 897 Query 137270 TCTGGACTAGTGCGCCATAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTT 137329 | ||| ||| ||||| ||||| ||||| | |||| | ||| | | | |||| Sbjct 898 TAGCTTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTAAGGAGTATTGCTT 957 Query 137330 CTTGGCTGTCGTAGGGCATATCCAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGA 137389 | || ||||| || || || | | || | |||||| | || |||| ||| | Sbjct 958 TCTCACTTTCGTAAGGTATTCTCATCAACACAAATGTATCTGCCATACCCTGAACACCAA 1017 Query 137390 TACCGATAGGTCTGTGTTTAAAATTTGATATTTGAGCGCTAACAAGCGGATAAAAGTTTG 137449 |||||||||||| ||| | | |||||| ||| || | | ||||||||||| Sbjct 1018 TACCGATAGGTCGGTGCCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAA 1077 Query 137450 CGTCTATAATTCTATTGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCGA 137509 | || || | | | || | ||| | ||| || | | | | || | | || | Sbjct 1078 CATCAATGACTTTGTTTAAATTTTGAGTCACAATCTTTGTGATTTCTTTTAATTTTTTAA 1137 Query 137510 AATCGAAGCTTTTAGACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGC 137569 ||| || || ||| || | | |||| || || | || || || || | ||||| Sbjct 1138 AATTAAATCTATTA------TTTTCAACAAACTTGTTAAGTGCTATGGAAGCAAGGTTGC 1191 Query 137570 ATACGGCCGTTTC-TGTATTGTCGCTGTATTGTACAATTTCGGCGCAAAGATTGCTGTTT 137628 | || ||| ||| | | || | ||||||| |||| || | |||||||||||| | Sbjct 1192 ACACTGCCACTTCATCTTCTGAAG-TGTATTGCACAACCTCAGTGCAAAGATTGCTACAT 1250 Query 137629 CGGATCACTCCCAA-ATTCTTTTGATTGTTTTTCTCGTTGACGTGATCTTTATATATCAT 137687 || | | |||| ||| |||||||| | ||| |||| ||| ||||||| ||| Sbjct 1251 TTAAT-AGTGCCAAGATTTTTTTGATTACTCTTCCTGTTGCAAGCATCCTTATATAACAT 1309 Query 137688 ATACGGAGTTCCGGTTTCGACTTGAGTCTCAACAATT--TTTCTGTGAAGATCCAACGCC 137745 ||| || || || || || ||||||| || | |||| ||| | | || || Sbjct 1310 ATATGGTGTACCAGTCTCCACTTGAGCTTCTATAATTGACTTCCAT--AACTCTTGAGCT 1367 Query 137746 ATAATTTGTTCTCTAAAC---TTGCCTTGAGCTTCAAAACTTTCGTATAGCCGTTTAAAT 137802 | | ||||| | ||||| || ||| ||||| | | | ||||| || |||| Sbjct 1368 CTGACTTGTTTTATAAACCGTTTTTCTT---CTTCATATTTGGCATATAGTTCTTCAAAT 1424 Query 137803 TTTTCGCCCATAACAATC-GTTAGACCCGGACACTCGTCGGGACACATCA-ACGACCATT 137860 | || |||||||| || | || || ||||| || | |||||||| | || | || Sbjct 1425 TCCTC-TCCATAACAGTCAGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAATC 1483 Query 137861 TTCCTCCCGTCCTAACCCTTTCCATGAACAGAGAAGGCGTCCATATAGCAAAAAGAAGGT 137920 ||| ||| | || || |||| ||| |||||| || |||||| ||| ||| || | Sbjct 1484 TTCATCCTTTTCT-ACTCTTTTCATAAACAGATCTGGTATCCATAAGGCATAAAACAGTT 1542 Query 137921 CGCGAGCCTTCATATCTTCGGCGCCCATATTGCGTTTTAAATCCaaaaaagtaaaaaTAT 137980 | | || |||| ||||| || | || |||||||| | || ||| || | Sbjct 1543 CTCTTGCTCTCATTTCTTCCTTACCTGTGTTCTTCTTTAAATCTAGGAACTCAAATATGT 1602 Query 137981 CAGCATGCCAAGGCTC 137996 | |||||||||||||| Sbjct 1603 CCGCATGCCAAGGCTC 1618 >seq4418 Length=3433 Score = 109 bits (120), Expect = 5e-19 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | |||||||||||| | || || || | || || | ||||| | |||| | Sbjct 634 ATGCAAATTTTTGTAAAAACACTTACAGGCAAGACTATTACTCTTGAAGTTG-AGCCTTC 692 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || || | || || ||||||| ||||| ||||| || || || || || Sbjct 693 TGATACAATTGAAAATGTTAAGGCAAAAATTCAAGATAAGGAGGGGATTCCCCCAGACCA 752 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTAC 25351 || || || |||| | || |||||||| ||||||| | | ||||| || ||| Sbjct 753 ACAGAGGCTTATTTTTGCAGGAAAACAACTTGAAGATGGACGCACACTGTCA--GACTAC 810 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||||||||| ||||| ||| | || ||||| || || ||||||| |||| Sbjct 811 AATATTCAAAAGGAATCTACCTTGCACTTAGTACTACGACTGAGAGGTGGAA 862 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | |||||||| ||| | || || || | ||||| | ||||| ||||| Sbjct 406 ATGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACATTGGAAGTGGAAGCTTCT 465 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || ||||||| || || || ||||| || || || || Sbjct 466 GATACAATAGAAAATGTTAAGGCAAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 525 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||||| |||| || ||||||||| | ||||||| | | | | ||||| ||| Sbjct 526 CAGAGACTGATTTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTATCTGATTATAAT 585 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||||||||| || | || ||||| Sbjct 586 ATTCAAAAAGAATCTACTTTGCACTTAGT 614 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | || || ||| | ||||| | ||||| ||||| Sbjct 862 ATGCAAATTTTCGTGAAAACGCTGACTGGCAAAACTATCACATTGGAAGTAGAAGCTTCT 921 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || ||||||| || ||||| || || || || || || Sbjct 922 GATACAATAGAAAATGTCAAGGCAAAAATTCAGGACAAAGAAGGCATTCCCCCAGACCAA 981 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | |||| | ||| || ||||| ||||||| |||| | ||||||||| Sbjct 982 CAGAGATTGATTTTTGCCGGTAAGCAACTTGAAGATGGAAGAACATTATCTGATTACAAT 1041 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| |||||||| ||| |||| | || | ||| | ||||| || Sbjct 1042 ATTCAGAAAGAATCTACCCTTCACCTTGTTCTCAGACTCAGAGGTGG 1088 >seq6747 Length=1699 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| |||||| | || |||||| | || ||| | ||||| |||||| Sbjct 1093 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACAATTACGTTAGAAGTTGAAGCCTCT 1034 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | ||||| ||||| || |||||||| || || || |||||| Sbjct 1033 GACACAATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 974 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAT--GTCAGCGATTACA 25352 || | || || | | || || ||| | ||||||| | | | | ||||| |||||| Sbjct 973 CAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTTTGTCAG--ATTACA 916 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||| ||||| |||||| |||| || || | | || ||||||| Sbjct 915 ATATTCAGAAAGAGTCCACCCTTCACTTGGTACTCCGTCTGCGAGGAGG 867 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| |||| ||||| | || || | ||||| ||| || Sbjct 1549 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACTCTGGAAGTGGAACCCTCT 1490 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | |||||| ||||| || |||||||| || ||||| |||||| Sbjct 1489 GATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCGCCTGATCAG 1430 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | || || | || || || ||| | ||||| | | | | | ||| ||||| Sbjct 1429 CAGCGTCTTATCTTCGCTGGAAAGCAATTGGAAGACGGCCGCACTCTTTCCGACTACAAC 1370 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||||||||||||| || |||| || || || Sbjct 1369 ATTCAAAAAGAATCTACTCTTCACTTGGTATT 1338 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | |||||||| ||| | || || ||| | ||||| | ||||| ||| ||| | Sbjct 865 ATGCAGATCTTTGTAAAGACACTCACAGGGAAAACTATCACATTAGAAGTGGAA-CCATC 807 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| || | || ||| || || || || |||||||| || || ||||| Sbjct 806 AGACACTATTGAAAATGTTAAAGCCAAGATACAAGACAAGGAGGGTATTCCCCCAGATCA 747 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | || |||| | || || || || || |||| | | | | || || ||||| Sbjct 746 ACAACGTCTAATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGTACTCTCTCTGACTACAA 687 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||| ||||| ||||| | || || || ||| | | |||||||| Sbjct 686 TATTCAGAAAGAGTCCACTTTGCACTTGGTATTACGTCTAAGAGGAGG 639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443355622035360