Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq6932 187 3e-42 seq6747 143 3e-29 seq4418 118 1e-21 seq47026 102 8e-17 seq173230 89.7 5e-13 >seq6932 Length=2340 Score = 187 bits (206), Expect = 3e-42 Identities = 547/831 (66%), Gaps = 35/831 (4%) Strand=Plus/Minus Query 104632 CCCAATCTGTCGCACATGCTTTACGGATTTATACCGATTTGCGGTGGCGACGGCATCAAC 104691 || ||||| | || |||| || || ||||| || |||||||| || || ||||| || Sbjct 1374 CCTAATCTTACTCATTTGCTCTATGGCTTTATTCCAATTTGCGGCGGTGATGGCATAAAT 1315 Query 104692 GAC-GCTCTAAAGACCGTTCCG-GGTAGTTTTGAAGCGTTGCAAAAATCGTGCGCTGGAC 104749 ||| ||| ||||| | || || ||||| |||| |||| || || || | Sbjct 1314 GACAGCTTAAAAGA--GATCGAAGGCAGTTTCCAAGCACTGCAGCGGTCCTGTAGCGGCC 1257 Query 104750 GGGAAAACTTCAAAGTGGCCATTCACGATCCGTGGGCGGCGGTGCAAAAACCGCAAAAAG 104809 | || |||||||||| | || |||||||| ||||| || | |||||||| ||||||| Sbjct 1256 GTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAG 1197 Query 104810 G--TGCCTCCGCTTGGAACGAACCGTACAAAGGCAATTTTGGTCAGATAATGGCCATCAA 104867 | || || || |||||||| || ||||||||||| ||||| || ||||| | | || Sbjct 1196 GATTGTCTTCG--TGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTAAA 1139 Query 104868 AAAAGCCAATCCTCAATTGCGCGTATTGCCCTCGGTGGGCGGGTGGACGCTGTCCGATCC 104927 | ||||| ||| ||||| | | ||||| | || ||||||||||| ||||||| Sbjct 1138 ACAAGCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTCGCCGATCC 1079 Query 104928 TTT----TTATCACATGCACGACGCTGAAAAACGTGCCACG-TTTGTGGAGTCGGTGCGC 104982 ||| || | | || || | || | | | |||| |||||| |||| || Sbjct 1078 TTTCTTCTTTTTAGTTG-ACAAATCTAAGAGA----ACACGATTTGTGCAGTCAGTTAAG 1024 Query 104983 GAATTTTTGTTGACTTGGAAATTCTTCGATGGCGTCGACATCGATTGGGAGTTTCCGGGC 105042 || ||| | | || ||||||||||| ||||| || || |||||||||||||| || || Sbjct 1023 GAGTTTCTTCTAACATGGAAATTCTTTGATGGTGTTGATATCGATTGGGAGTTCCCTGGT 964 Query 105043 GGCAAAGGCGCCAACCCCAATCAAGGCGACGCGAAACGCGATGCTCTCACGTACGTGTCT 105102 || ||||| || ||||| ||| || | | || |||| | || || | Sbjct 963 GGTAAAGGTGCTAACCCTGATCTCGGTAGCCCAGAA---GATGGTGATTGTTATGTAAGT 907 Query 105103 CTTTTGAAAGAGTTGCGTTCGATGCTCGACGA----TTTGCAAAAACAAACCAATCGCTC 105158 | ||||||| || ||| ||||||||| || | || || | | || | Sbjct 906 TTGATGAAAGAATTACGTGAGATGCTCGATGAGCTCTCAGCTAAGA-ATGGTAAGAAATA 848 Query 105159 CGAGCGTTTGTTGCTCACCAGCGCCATCAGCGCGGGCGACGACAAGATCGCCGTGGTGGA 105218 ||| || | || || || ||| | || || || ||| || || || Sbjct 847 CGA--ATTAACTTCT-------GCTATTAGCTCTGGATGGGATAAAATCCAAGTTGTTGA 797 Query 105219 TTACGGTCACGCTCAAACCTACTTGGATTTGATATTTTTGATGAGTTACGATTTTAAAGG 105278 ||||| | ||||||| || ||||| || || ||||||||||| || || || || Sbjct 796 CTACGGCAAGGCTCAAAATTATATGGATCATATTTTCTTGATGAGTTATGACTTCAAGGG 737 Query 105279 CGCCTGGTCCAACACAAATCTCGGTCATCAGACGGCGTTGTACGCACCCGCGTGGAAACC 105338 |||||||| || | ||| || ||||| || | |||||||| || || |||| || Sbjct 736 AGCCTGGTCAAATGATACTCTTGGACATCAAACACCATTGTACGCGCCTGCATGGAGTCC 677 Query 105339 CAACGAACGCTACACCACCGATTACGCCGTGAACGCTCTGTTGAAACAGAACGTGCTGCC 105398 ||| ||| ||||| | || | || || || ||||| |||| ||| || Sbjct 676 CAAGGAAACTTACACATCTGACTTCGGAGTAAAATACTTGTTGGCACAGGGAGTGAATCC 617 Query 105399 CCGCAAAATTGTTGTTGGCGTGGCGATGTACGGCCGCGGTTGGATCGGCGT 105449 || ||||| || || || || ||||| || || ||||||| ||||| Sbjct 616 TAAGAAGATTGTAGTAGGTGTTGCCATGTATGGTCGTGGTTGGACTGGCGT 566 >seq6747 Length=1699 Score = 143 bits (158), Expect = 3e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | || ||||| || | ||| || || ||||| |||||||||||||||||| Sbjct 1321 TTCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGG 1380 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || ||| | ||| || | || || || || || || | |||||||||||| |||| Sbjct 1381 AAAGAGTGCGGCCGTCTTCCAATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGGCG 1440 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | ||||| ||||| ||||| ||||| ||| || || | || || || | ||||| Sbjct 1441 GGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCA 1500 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || ||||||||||| || || |||| |||||||| ||||| ||||| Sbjct 1501 CTTCCAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1549 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||||| || || | || | ||| || ||||| || || ||||| ||||| || | | Sbjct 867 CCTCCTCGCAGACGGAGTACCAAGTGAAGGGTGGACTCTTTCTGAATATTGTAATCTGAC 926 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | || || || || | || || || ||||| || | |||||||||||| || || Sbjct 927 AAAG-TGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGG 985 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||| ||||| ||||| ||||| || || || | |||||| || | ||| || Sbjct 986 GATGCCCTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCAAC 1045 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||||| ||||| || || | |||||||| ||||||||||| Sbjct 1046 TTCTAACGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAAATTTGCAT 1093 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || ||||| || | ||||| || ||||||||||||||||| || || | || | Sbjct 1104 AGACGCAATACTAAATGTAGAGTAGATTCCTTTTGAATGTTATAATCAGATAGTGTACGG 1163 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || || ||||| || |||||||| | | || || || || || || |||||| Sbjct 1164 CCATCTTCCAGTTGTTTTCCAGCAAAAATGAGCCTTTGTTGGTCTGGGGGAATACCTTCT 1223 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGT 134674 || ||||| || ||| || | || | |||| ||||| || | ||| || || | || Sbjct 1224 TTGTCTTGGATCTTTGCCTTCA-CGTTTTCAATAGTGTCCGATGGTTCTACCTCTAAGGT 1282 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 |||||||| || || | ||| ||||| || || |||||| Sbjct 1283 GATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCATT 1322 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAG--AGTCGTCGAGCTGTTTGC 134574 || ||||| ||||| |||||||||| || || | ||| | || || | |||||| | Sbjct 441 GTAGATTCTTTTTGGATGTTGTAGT--CCGACAGAGTGCGGCCATCCTCCAACTGTTTAC 498 Query 134575 CTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTT 134634 | ||||| || | |||||| || || || || ||||| || || ||||| || ||| | Sbjct 499 CAGCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTATCTTGGATCTTTGCCT 558 Query 134635 TGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAG 134694 | || || | |||||||| | ||||| || | ||| || ||||| || || | | Sbjct 559 TAACATTTTCGATAGTGTCGGATGGCTCCACCTCCAAAGTGATAGTTTTCCCAGTAAGTG 618 Query 134695 TTTTAACGAAAATTTGCAT 134713 | ||||| || || ||||| Sbjct 619 TCTTAACAAAGATCTGCAT 637 >seq4418 Length=3433 Score = 118 bits (130), Expect = 1e-21 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || || || |||| ||| | ||| | || |||||||| ||||| || ||||| Sbjct 406 TTCCACCCCTAAGACGCAGCACCAAGTGCAAAGTCGATTCCTTCTGAATATTATAGTCTG 347 Query 134545 CAACGGTGTGAGAG--TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 || ||||| | || || || || || || || |||||||| | || || || || Sbjct 346 --ACAGTGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAAATCAATCTTTGTTGGTCTGG 289 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662 || |||||||| || |||||||| ||| || || || | |||||| || | ||| Sbjct 288 AGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTAACATTTTCGATTGTGTCAGATGCTTC 229 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| || | |||||| ||||| || || | |||||||| ||||||||||| Sbjct 228 CACTTCTAAAGTAATAGTTTTGCCAGTCAGTGTTTTAACAAAAATTTGCAT 178 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || |||||||||| | || ||||| || || ||||| || ||||| ||||| || | Sbjct 1088 CCACCTCTGAGTCTGAGAACAAGGTGAAGGGTAGATTCTTTCTGAATATTGTAATCAGAT 1029 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | | || || || || || || ||||||||||| | ||| || || || || Sbjct 1028 AATGTTCTTCCA-TCTTCAAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGGGG 970 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||||||||| || ||||||||| ||||| || | ||| || || | ||| || Sbjct 969 AATGCCTTCTTTGTCCTGAATTTTTGCCTTGACATTTTCTATTGTATCAGAAGCTTCTAC 910 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || | || || ||||| || || | ||||| ||||||||||||||| Sbjct 909 TTCCAATGTGATAGTTTTGCCAGTCAGCGTTTTCACGAAAATTTGCATT 861 Score = 116 bits (128), Expect = 4e-21 Identities = 166/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| ||||| ||||| | || | ||| | || |||||||||||||| |||||||| Sbjct 862 TTCCACCTCTCAGTCGTAGTACTAAGTGCAAGGTAGATTCCTTTTGAATATTGTAGTCTG 803 Query 134545 CAACGGTGTGAGAG--TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 || ||||| | || || || ||||| ||||||||||| | | ||| || || || Sbjct 802 --ACAGTGTGCGTCCATCTTCAAGTTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCTGG 745 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662 || || || || || |||||||||||| || || || | ||| || || | || Sbjct 744 GGGAATCCCCTCCTTATCTTGAATTTTTGCCTTAACATTTTCAATTGTATCAGAAGGCTC 685 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || |||||||| || || || || | ||||| || |||||||||||| Sbjct 684 AACTTCAAGAGTAATAGTCTTGCCTGTAAGTGTTTTTACAAAAATTTGCATT 633 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || || || |||| || | ||| | || ||||| |||||||| || || || Sbjct 634 TTCCACCCCTTAGACGCAGAACTAAGTGCAAAGTAGATTCTTTTTGAATATTATAATCAG 575 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| | || || | ||||||||| || ||||||| | ||| || || || | Sbjct 574 ATAGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAAATCAGTCTCTGTTGGTCTGGAG 515 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || |||||||||||| || || || | ||| || || | ||||| Sbjct 514 GAATACCTTCCTTGTCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCA 455 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || | || || || || || || | || || || |||||||||||| Sbjct 454 CTTCCAATGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 405 >seq47026 Length=2159 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 52805 CGCAAAAACGGACATTGCGGTGCCCACCGTCGATGATCGATTTCTGGATCGTCGCCATCC 52864 |||| || || || || || ||||||| | | || || | | ||||||||||| | Sbjct 2092 CGCAGGAAGGGGCACTGGGGCGCCCACCTTTGGTGGTCCTTGGCGGGATCGTCGCCCGCA 2033 Query 52865 ATCCATTTCATTATTTCCACTTTGCAAAAAGCACATCGCACTTCGTCGTTGCGACCCAAA 52924 | ||||||||| ||||| ||||| ||||| || || || ||||| ||| ||| |||| Sbjct 2032 ACCCATTTCATAATTTCTACTTTACAAAACGCGCAGCGTACTTCATCGCCGCGGCCCAGG 1973 Query 52925 TAATAAAAACCGTTTCGAGCGAGTCGTGCGGGCGACAGAAAACACAAC-GGCCATCCAAC 52983 ||||| || ||||| | ||||| | |||| | | |||| ||||| |||||||| | Sbjct 1972 TAATAGAAGCCGTTCCTTGCGAGAGATTCGGGTAATA-AAAATACAACGGGCCATCCGAT 1914 Query 52984 AAAAGTGTTGAGTCG 52998 ||| || || || || Sbjct 1913 AAATGTCTTTAGCCG 1899 >seq173230 Length=587 Score = 89.7 bits (98), Expect = 5e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || |||||||| || ||||||||||| ||| || || | |||||||| | ||| Sbjct 1 GGAATGCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCGGAAGGTTCA 60 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || | ||||||||||||||| || | ||||| |||||||| ||||||||| Sbjct 61 ACTTCCAAAGTAATGGTTTTACCAGTGAGTGTTTTCACGAAAATCTGCATTTTG 114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 503424042197960