Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq48588 567 1e-156 seq289356 96.9 5e-15 seq111536 91.5 2e-13 seq94045 86.0 9e-12 >seq48588 Length=2845 Score = 567 bits (628), Expect = 1e-156 Identities = 1102/1612 (68%), Gaps = 25/1612 (2%) Strand=Plus/Plus Query 68356 ATTTTATCCTTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAG 68415 |||||| | || || | ||||||||||| | | ||| |||||||| |||| ||| Sbjct 255 ATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGTAG 314 Query 68416 TACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAA 68475 ||||| || ||||| | ||| | |||| ||| |||||| || |||||||| | Sbjct 315 TACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCCA 374 Query 68476 TAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTA 68535 || | || | || | ||| || || | ||||||||||| || || || ||||||||| Sbjct 375 TAGTTAGGTTTAGCAACATGTATGTTGAAAGATTGACTTTGGTCTATAAACGCTCCTCTA 434 Query 68536 TCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTT--AAAAATCT 68593 || || ||||| | ||| | || | | ||| ||||| | || || | |||||| Sbjct 435 TCAGCGGCCATCTGTATGGACGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAATCT 494 Query 68594 GTTTGATATCATCTGGAAGGCTCGTATTTT---GAATGGATCCACCATCGGATATAATTA 68650 || || || | || | | | ||| | || |||||| | | ||||||| | Sbjct 495 CTT--ATTTCTTTAGGGATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATAA 552 Query 68651 TATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGAT 68710 ||| || || || |||| ||| || | | || ||| | | || ||||| | | Sbjct 553 GATTTTTCATATCTTCATCCCATAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGGT 612 Query 68711 TAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTT 68770 | |||| ||||||| |||||||| ||||| | ||||||||| ||| |||||| Sbjct 613 TCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAATGGTT 672 Query 68771 CCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCA 68830 | | ||||||| | || || |||||||| ||||| || ||||||||||||||||| | || Sbjct 673 CAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTTGGCATAGGTGCTATCA 732 Query 68831 ATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAA 68890 ||| | ||| | | ||||||| || || || ||||| || ||| | ||||| Sbjct 733 ATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTGAGGACAGCCCAGTTCCAAA 792 Query 68891 GATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATC 68950 | || | || | ||| | ||| || || || || || | || || || Sbjct 793 GGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTAGCTGGACTTC 852 Query 68951 CATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCAC 69010 | | |||||| || | ||||| | ||| |||| ||||||||| || |||||||||| Sbjct 853 CTTGATATGTGCTGTATGCGCCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATGCAC 912 Query 69011 CGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATG 69070 | |||||||||||||| || || | | ||| || | ||||| ||| ||| | | Sbjct 913 CATAATAAATTGTTTCAAATATTTGTTGATTAAGGAGTATTGCTTTCTCACTTTCGTAAG 972 Query 69071 GATAATGTAAAAGA-ATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTA 69129 | || | | | | | ||||| |||||||| |||||||| |||||||||||||||| Sbjct 973 G-TATTCTCATCAACACAAATGTATCTGCCATACCCTGAACACCAATACCGATAGGTCGG 1031 Query 69130 TGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 69189 || ||| |||||||| ||| ||||| || | ||||||| | |||| ||| || | ||| Sbjct 1032 TGCCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGACTTTG 1091 Query 69190 TTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCA 69249 || | |||| | || | || | || |||| ||| ||||| ||||| | Sbjct 1092 TTTAAATTTTGAGTCACAATCTTTGTGATTTCTTTTAATTTTTTAAAATTAAATCTATTA 1151 Query 69250 TCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCAT--TAG 69307 | | ||||||| | || ||||||| || || || || || ||||| || |||| | Sbjct 1152 TTTTCAACAAACTTGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCATCTTCT 1211 Query 69308 AATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTT 69367 | || ||||| | | ||| || || ||||| |||||||| ||||| || ||||||| Sbjct 1212 GAAGTG--TATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGATTTT 1269 Query 69368 GCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAA 69427 ||||||||||| |||| || || ||||| || | ||| | || |||||||| || | Sbjct 1270 TTTGATTACTCTTCCTGTTGCAAGCATCCTTATATAACATATATGGTGTACCAGTCTCCA 1329 Query 69428 TCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACG-GTCTTGTAA--C 69484 |||| ||| ||||| || ||||| | || || | | | | || || || ||| | Sbjct 1330 CTTGAGCTTCTATAATTGACTTCCATA--ACTCTTG-AGCTCTGACTTGTTTTATAAACC 1386 Query 69485 GCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCA 69544 | || |||| |||||||| | |||||| ||| ||||| ||||| || ||| | | Sbjct 1387 GTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCCATAACAGTCAGCGA 1446 Query 69545 ATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTA---ACTCGTT 69601 |||||||| |||| |||||||| | ||| || ||| |||||||| |||| || Sbjct 1447 GGCCAGGACAATCATGAGGACACATGA--GACTCCA-ATCTTCATCCTTTTCTACTCTTT 1503 Query 69602 TCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCAT 69661 ||||||| ||||| || ||||| | || ||| || ||||| | ||| ||||||| | Sbjct 1504 TCATAAACAGATCTGGTATCCATAAGGCATAAAACAGTTCTCTTGCTCTCATTTCTTCCT 1563 Query 69662 TTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGAT 69721 | ||||| || || || | ||| || ||||| | || || | |||||| || |||| | Sbjct 1564 TACCTGTGTTCTTCTTTAAATCTAGGAACTCAAATATGTCCGCATGCCAAGGCTCTAAGT 1623 Query 69722 ATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTAT 69781 | || || | | || || ||||| ||||| || ||||||| ||||||||||| || | Sbjct 1624 AAATTGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGT 1683 Query 69782 TATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAAC 69841 | || ||||||| ||| || | | |||||| || ||||| || |||| |||||| Sbjct 1684 TGTACACTCTCAACATTGGCACTAGACCATTTGAAACCCCATTAGTACCAGCTATATAAG 1743 Query 69842 TTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTA 69901 || || | || | || || |||||| || || || |||||| |||| Sbjct 1744 ACCCCTGGGCTCTGATGCAATGTGTATGTAAACCTATGCCACCGGCAGATTTAGAAATTA 1803 Query 69902 GAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCAT 69953 ||||| |||| || || ||| | ||||| || || ||||| ||| |||| Sbjct 1804 ATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATACTATCGTCTTTCAT 1855 Score = 100 bits (110), Expect = 4e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 70135 TTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTAT 70194 ||||| ||||| || |||| |||||| |||||| ||||||||| ||||||||||||||| Sbjct 2254 TTATTGTTTATCTTTAACAAATATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 2313 Query 70195 GAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTT 70244 ||| ||||| || |||| ||| |||| | || ||| ||||| | ||| Sbjct 2314 TTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 2363 >seq289356 Length=614 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 70345 TTTTTTGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCA 70404 || || || || || |||||||| ||||| ||||||||||| || | ||| ||||| ||| Sbjct 511 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCA 452 Query 70405 GGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTT 70464 ||||| | |||||| ||||||||| ||||| ||||||| |||| | || |||| Sbjct 451 GGATGATCTGTAGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 392 Query 70465 GTAACTCCGTTATATA 70480 || || || ||||| Sbjct 391 GTTACACCAGAATATA 376 >seq111536 Length=3730 Score = 91.5 bits (100), Expect = 2e-13 Identities = 243/369 (66%), Gaps = 7/369 (2%) Strand=Plus/Plus Query 162494 TTATGACCCC--TATTAATCCTATGCTAGCAGAATCATGCGATTCCGTTAACAAGGCATT 162551 ||||||| || ||||| || ||| |||| ||| | ||| | || ||| | | ||| | Sbjct 2907 TTATGACTCCAGTATTA--CCGATGTTAGCTGAAGCTTGCAAGTCGGTTGAAATGGCTAT 2964 Query 162552 TAAAAAATTTCCATCTGGGATGTTTGCAGAAGTCAAATATGATGGTGAACGAGTGCAAGT 162611 ||||||| |||| ||| |||||| | || | ||||||||||| ||||| || ||||| Sbjct 2965 GAAAAAATGTCCAAATGGCATGTTTTCTGAGATAAAATATGATGGAGAACGGGTTCAAGT 3024 Query 162612 TCATAAAAACAATAACAAGTTTGCGTTCTTTAGTAGAAACATGAAACCCGTTTTACAACA 162671 ||||||||| || |||| | ||| | | | ||||| || | || Sbjct 3025 TCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 3084 Query 162672 CAAAGTTGATTATCTAAAAGAATACCTTCCCATAGCATTCAAAAAAGCTACATCTATTAT 162731 ||||||| | || | ||||| || | || | |||||| |||| | | | || Sbjct 3085 CAAAGTTAGTCATTTTAAAGATTATTTACCTAAAGCATTTCCTAAAGGAGCTGATTTGAT 3144 Query 162732 CTTGGATTCTGAAATTGTTCTAGTCGACGAACATAATG---TACCACTTCCGTTTGGAAG 162788 |||||| ||||| | || | || || | ||| || |||| | || ||||| | Sbjct 3145 TTTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTTGGTAC 3204 Query 162789 TTTAGGAATACATAAAAAGAAAGAATATAAAAACTCTAATATGTGTTTGTTCGTGTTTGA 162848 ||||| || || ||| | ||||| |||| | || | | ||||| | | ||||| Sbjct 3205 ATTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGTTTATATATATTTGA 3264 Query 162849 TTGTTTATA 162857 ||| ||||| Sbjct 3265 TTGCTTATA 3273 >seq94045 Length=338 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 40103 TTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTC 40162 || |||| ||||||||||| || ||||||||||| || || || ||||| ||||| | | Sbjct 307 TTGGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 248 Query 40163 CATATATCACGATATTGTATTGGAAAAATAACAAA 40197 ||||| || ||||||| ||||| || ||||| || Sbjct 247 CATATGTCCGGATATTGGATTGGGAATATAACGAA 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 684225365013720