Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq94046 89.7 4e-13 seq99942 87.8 1e-12 seq8995 84.2 2e-11 seq94045 82.4 6e-11 >seq94046 Length=398 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 43796 GACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTAT--ATCTTTGGTTT 43853 ||||| ||| ||||| |||||||| || ||||||||||| | | | || | Sbjct 365 GACTTGGCAGATTGGGAGACATTAAAAGATTGCGAGAAACATTTTATCAAACAT--GTCT 308 Query 43854 TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGC 43913 | || || ||||| || || || || || ||||| || ||||| || || | | Sbjct 307 TAGCCTTCTTTGCGGCTTCTGATGGTATTGTTAATGAGAACTTGGTGGAGCGTTTCTCAC 248 Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 |||| |||||| | | ||||| | || || ||||| ||||||||||| || |||||| Sbjct 247 AAGAGGTTCAAGTGACTGAAGCCAGGTGCTTCTATGGTTTTCAAATTGCTATGGAAAATG 188 Query 43974 TTCATTCGGAAATGTAC 43990 ||||||| || |||||| Sbjct 187 TTCATTCAGAGATGTAC 171 >seq99942 Length=4096 Score = 87.8 bits (96), Expect = 1e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 115031 AATGGTCATACGTGAAGGAAAAGCATGCGGATTAATAATCAAGTCTGGCACTAACCCGTC 115090 ||| ||||| || ||||| | ||||| ||||||||||| | |||||| || || || Sbjct 3115 AATTGTCATGCGAGAAGGGATGGCATGGGGATTAATAATGATATCTGGCGTCAAGCCCTC 3056 Query 115091 GGCTGTGAACGGCATGTCGTGCTGATCG-TACATCATTCCACAAGTTCCTTTTTGAGCGG 115149 | ||| |||||||| || | || ||| ||| |||||||| |||||||||||| || Sbjct 3055 GCATGTAAACGGCATATCTTCTTG-TCGATACTGGATTCCACAGGTTCCTTTTTGACCGT 2997 Query 115150 TAAACGATGCAAATTTATCACCAAT 115174 | || ||||| ||||| ||||| Sbjct 2996 GACGAGAAGCAAACTTATCCCCAAT 2972 >seq8995 Length=315 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 |||||||||||||||||||| |||| || | |||||||| ||| || |||| ||| Sbjct 216 CCCAAAATTGTAAATGGTCCACAAATTTTGGACAAATATGTCGGTGAAAGTGAAGCGAAT 157 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACG 19529 | | | ||||||||||| |||||||||||| | ||||| Sbjct 156 ATTAGGAGATTGTTTGCTGATGCTGAAGAAGAAGAGAAACG 116 >seq94045 Length=338 Score = 82.4 bits (90), Expect = 6e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 43709 TTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGG 43768 || ||||| ||||||| ||||||||||| ||||| |||||||| | || || |||||| Sbjct 222 TTCCCAATCCAATATCCGGACATATGGCAGATGTATAAAAAAGCTGAAGCATCGTTTTGG 281 Query 43769 ACAGCAGAAGAAGTTGATTT 43788 || ||||||||||| || || Sbjct 282 ACTGCAGAAGAAGTAGACTT 301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395942140150615