Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq48588 170 2e-37 >seq48588 Length=2845 Score = 170 bits (188), Expect = 2e-37 Identities = 893/1408 (63%), Gaps = 33/1408 (2%) Strand=Plus/Plus Query 110698 TCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTG 110757 |||||| |||| || |||| ||| |||||||||| ||||| | || || | ||||| Sbjct 641 TCTTCTTTGGTAAATATTTGATGTAAATGGTTCAAAAGATTCAGTGTTGCCAAGAATTTG 700 Query 110758 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTT 110817 ||| || ||||| |||||||| ||||| ||||| ||| || || | ||| | | || Sbjct 701 TGCAGTAGAGGCAGTTGGCATAGGTGCTATCAATAGAGAATTGCGCAAACCATGTT--TT 758 Query 110818 G--ATGCGTTCCTTGAGAACATCCCAGT--CGTAGTTGAGCTTG-GTTTCACCTTCCCAC 110872 | || ||| ||||| ||| |||||| | || | | | |||| |||||| Sbjct 759 GCTATCTTTTCTTTGAGGACAGCCCAGTTCCAAAGGTCTGTAGGAGTTTTG---TCCCAC 815 Query 110873 ATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCT 110932 || ||| |||| || | |||||| || ||| || | | | || || | ||| Sbjct 816 ATATCATACTGGAGGATACCTTGGCTAGCTGGACTTCCTTGATATGTGCTGTATGCGCCT 875 Query 110933 TGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATA 110992 | ||| || |||||||| || || || | | | | ||| || |||||||| || Sbjct 876 TCTTTTTCTGCTAATTCACAACTAGCTTCTAATGCACCATAATAAATTGTTTCAAATATT 935 Query 110993 CGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCA-CAAAATAAATAC 111051 | ||| | | |||| || || | | ||| || ||| | |||| Sbjct 936 TGTTGATTAAGGAGTATTGCTTTCTCACTTTCGTAAG-GTATTCTCATCAACACAAATGT 994 Query 111052 ATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGC 111111 ||| || | ||| |||||||| | ||| ||||||| ||| | |||||| || || || Sbjct 995 ATCTGCCATACCCTGAACACCAATACCGATAGGTCGGTGCCTCATATTTGAAGTTTTTGC 1054 Query 111112 AGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAAT 111168 ||| || |||||||| || ||||||||| ||||| ||||| || ||||| Sbjct 1055 T---TCAGGGACAGGATAAAAGTTAACATCAATGACTTTGTTTAAATTTTGAGTCACAAT 1111 Query 111169 CTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTT 111228 |||||||||||| | | ||||| | ||| ||| | | | | |||| ||| |||| Sbjct 1112 CTTTGTGATTTCTTTTAATTTTTTAAAATTAAA---TCTATTATTTTCA---ACAAACTT 1165 Query 111229 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 111288 ||| || || || || | ||||| || ||| ||||| | ||||| | | Sbjct 1166 GTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCATCTTCTGAAGTGTATTGCAC 1225 Query 111289 AATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTT 111348 || || || || | ||| || ||||| || || | ||| ||||| ||||||||| | Sbjct 1226 AACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGATTTTTTTGATTACTCTTCCT 1285 Query 111349 GTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAAT 111408 |||||| |||||||| || | ||| || || || || |||||| || | || | ||| Sbjct 1286 GTTGCAAGCATCCTTATATAACATATATGGTGTACCAGTCTCCACTTGAGCTTCTATAAT 1345 Query 111409 AGCCTTCCAAACATCGGCGGCTGGTACAATGGCGT-TGGCCCGTCCCTCCGCCTCGTACT 111467 | |||||| | || ||| || || | | |||| || | || || | Sbjct 1346 TGACTTCCATAACTCTTGAGCTCTGAC-TTGTTTTATAAACCGTTTTTCTTCTTCATATT 1404 Query 111468 TTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTG 111527 | | || || ||||||| ||||| || ||| | ||| || || | | | Sbjct 1405 TGGCATATAGTTCTTCAAATTCCTCTCCATAACAGTCAGCGAGGCCAGGACAATCATGAG 1464 Query 111528 GACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 111587 |||| | ||| ||| | || | | || || | ||||| || || ||||| |||| Sbjct 1465 GACACATGAGACTCCAATCTTCATCCTTTTCTACTCTTTTCATAAACAGATCTGGTATCC 1524 Query 111588 ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 111647 | | || |||| || ||||| | ||||| | |||| ||| ||| | Sbjct 1525 ATAAGGCATAAAACAGTTCTCTTGCTCTCATTTCTTCCTTACCTGTGTTCTTCTTTAAAT 1584 Query 111648 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----C 111703 | |||||||| | || ||||| ||||| ||||| | || | ||| | | || | Sbjct 1585 CTAGGAACTCAAATATGTCCGCATGCCAAGGCTCTAAGTAAATTGCAAATGCACCGGGAC 1644 Query 111704 TTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 111763 || | ||| |||||| |||||| | || || ||| | || | | |||||| Sbjct 1645 GTTTG-TTTCCACCTTGATCTACATATCTGGCAGTATTGTTGTACACTCTCAACATTGGC 1703 Query 111764 ATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCA 111823 | | ||||| ||| ||||| || || ||| ||| | |||||| | | Sbjct 1704 ACTAGACCATTTGAAACCCCATTAGTACCAGCTATATAAGACCCCTGGGCTCTGATGCAA 1763 Query 111824 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 111883 || | || | || || || || || | || || ||| ||||| | | | ||| Sbjct 1764 TGTGTATGTAAACCTATGCCACCGGCAGATTTAGAAATTAATGCACATTGTTTTAAAGTA 1823 Query 111884 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 111943 || | ||||| | || || || || | || |||||||||||| ||| | ||| Sbjct 1824 TCAAAAATACCTTCAATACTATCGTCTTTCATAGCTATAAGGAAGCAAGAGGAAAGCTGT 1883 Query 111944 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGA 112002 || || |||||| | || ||| || || || |||| || | || ||| | | || Sbjct 1884 GGCCTCGGTGTAGCTGCTGAGAACAGTGTAGGGCTTGCATGTGT-AAAATATTTCTCTGA 1942 Query 112003 CATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGAC 112062 |||| | | || || | | || |||||||||||| || || ||||| || | ||| Sbjct 1943 CATCATATTATAAGTATTGATTGCACTATCAATGTCTTCACCATGAATGCCTATGGAGAC 2002 Query 112063 CCGCATGAACATGTACTGTGGGGTTTCC 112090 | ||| | ||||| || || ||||| Sbjct 2003 TCTCATAAGCATGTGTTGAGGTCTTTCC 2030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 625578569440800