Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq6747 123 2e-23 seq4418 105 4e-18 seq47026 91.5 9e-14 seq54289 84.2 1e-11 >seq6747 Length=1699 Score = 123 bits (136), Expect = 2e-23 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||||||| || ||||| ||||| |||||||||||||||||||| || Sbjct 1095 CCGCCACGAAGACGCAATACTAAATGTAGAGTAGATTCCTTTTGAATGTTATAATCAGAT 1154 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| |||||||| || ||||| || | | |||||||| || || Sbjct 1155 AGTGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATGAGCCTTTGTTGGTCTGGGGGA 1214 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCT--CTCC 34656 | || || |||||| |||| |||| || ||| | ||| ||||| || | || Sbjct 1215 ATACCTTCTTTGTCTTGGATC-TTTGCCTTCACGTTTTCAATAGTGTC--CGATGGTTCT 1271 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | ||| || ||||| || || | || || ||||| |||||||| Sbjct 1272 ACCTCTAAGGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 1321 Score = 122 bits (134), Expect = 5e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||| ||||| || ||||| || ||||||||||| || || ||| Sbjct 1323 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAA 1382 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | ||| || || || || || | |||||| || || ||||| Sbjct 1383 AGAGTGCGGCCGTCTTCCAATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGGCGGG 1442 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||||| |||||| ||| || ||||| | ||| || || | |||||| Sbjct 1443 ATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACT 1502 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || |||| ||||| |||||||||||||| Sbjct 1503 TCCAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1549 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| || ||||| || | |||| ||| || ||||| || || || || Sbjct 639 CCTCCTCTTAGACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAG 698 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || ||||| ||||| |||| ||| ||||| || || || Sbjct 699 AGAGTACGACCATCCTCCAGCTGCTTACCAGCAAAAATTAGACGTTGTTGATCTGGGGGA 758 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| || | |||||| | ||| |||||| ||||| Sbjct 759 ATACCCTCCTTGTCTTGTATC-TTGGCTTTAACATTTTCAATAGTGTCTGATGGTTCCAC 817 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || ||||| || || | || || ||||| |||||||| Sbjct 818 TTCTAATGTGATAGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 865 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || ||||| | ||| || ||||| ||||| || || || Sbjct 411 CCACCGCGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCCGAC 470 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || | |||||||| ||||| || | |||||||||||| || || Sbjct 471 AGAGTGCGGCCATCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGA 530 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||| ||| |||| |||| ||||| | || ||||| |||||| Sbjct 531 ATGCCCTCCTTATCTTGGATC-TTTGCCTTAACATTTTCGATAGTGTCGGATGGCTCCAC 589 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || ||||| || || | || || ||||| |||||||| Sbjct 590 CTCCAAAGTGATAGTTTTCCCAGTAAGTGTCTTAACAAAGATCTGCAT 637 >seq4418 Length=3433 Score = 105 bits (116), Expect = 4e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||||||||| || || ||||| ||||| || | |||||||||||||| || ||||| Sbjct 824 TCCTTTTGAATATTGTAGTCTGACAGTGTGCGTCCATCTTCAAGTTGTTTTCCTGCAAAA 765 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GA 34634 || | | ||||||||| || || | |||||||| ||| ||| ||||| ||||| Sbjct 764 ATAAGCCTCTGTTGGTCTGGGGGAATCCCCTCCTTATCT-TGAATTTTTGCCTTAACATT 706 Query 34635 TAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | |||||| || ||| ||||| | || || || || || || | ||||| || Sbjct 705 TTCAATTGTATCAGAAGGCTCAACTTCAAGAGTAATAGTCTTGCCTGTAAGTGTTTTTAC 646 Query 34695 AAAAATCTGCAT 34706 |||||| ||||| Sbjct 645 AAAAATTTGCAT 634 Score = 95.1 bits (104), Expect = 8e-15 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || || ||||| || ||||| || | ||||| | ||||||||||| ||||||||||| Sbjct 1052 TCTTTCTGAATATTGTAATCAGATAATGTTCTTCCATCTTCAAGTTGCTTACCGGCAAAA 993 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GA 34634 || || | ||||||||| || || | || || ||||| ||| ||||| || || Sbjct 992 ATCAATCTCTGTTGGTCTGGGGGAATGCCTTCTTTGTC-CTGAATTTTTGCCTTGACATT 934 Query 34635 TAAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||||| || ||| || ||||||| || || ||||| || || | |||||||| Sbjct 933 TTCTATTGTATCAGAAGCT-TCTACTTCCAATGTGATAGTTTTGCCAGTCAGCGTTTTCA 875 Query 34694 CAAAAATCTGCAT 34706 | ||||| ||||| Sbjct 874 CGAAAATTTGCAT 862 >seq47026 Length=2159 Score = 91.5 bits (100), Expect = 9e-14 Identities = 125/173 (72%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 46826 GGATGGCCCGT--CACTTTTATTACACCCGAAGTGATGGCACGTAACGGATTTTATTATC 46883 ||||||||||| | ||||||| ||||||| | ||| | ||||| || ||||| | Sbjct 1917 GGATGGCCCGTTGTATTTTTATT--ACCCGAATCTCTCGCAAGGAACGGCTTCTATTACC 1974 Query 46884 TTGGAAGAGGTGATGAAGTTCGATGCGCCTTTTGCAAGGTTGAGATCATGCGTTGGGAAG 46943 | || | || |||||||| || ||||| ||||| || || || || ||| |||| | Sbjct 1975 TGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAAATTATGAAATGGGTTG 2034 Query 46944 AGGGTGATGATCCTGCCGAAGACCATAAACGTTGGGCTCCTCAGTGTCCGTTC 46996 ||| || ||||| ||| | ||||| || | ||||| || ||||| || ||| Sbjct 2035 CGGGCGACGATCCCGCCAAGGACCACCAAAGGTGGGCGCCCCAGTGCCCCTTC 2087 >seq54289 Length=786 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 47138 GATTGGCCTCGTGGTTTGCGTCAGAGACCAAAAGAGTTAGCGGACGCGGGCTTCTTTTAT 47197 ||||||||||| | || || | ||| | || | || || ||||| ||||| || Sbjct 106 GATTGGCCTCGCAGCATGAAGCAAAAACCCGAGGAACTCGCCGAGGCGGGATTCTTCTAC 165 Query 47198 ACTGGTGAAGGTGATAAAACGAAGTGTTATTATTGTGATGGTGGTCTGAGAGATTGGAAC 47257 || || | || |||||||| ||||| | || |||||||| || || | || ||| | Sbjct 166 ACCGGCCAGGGCGATAAAACTAAGTGCTTCTACTGTGATGGCGGGCTCAAGGACTGGGAG 225 Query 47258 GAAGAAGATATACCTTGGGAGGAGCACGCTCGTTGGTTTGATCGTTGTGTCTACGTTAAA 47317 | || || | || |||||| ||||||| || ||||| || || || | |||||| | Sbjct 226 AACGACGACGTGCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGGTGCGCCTACGTCCAG 285 Query 47318 TTGGTAAAAGG 47328 ||||||| || Sbjct 286 CTGGTAAAGGG 296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313530834589859