Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq6932 235 5e-57 seq6747 172 5e-38 seq4418 141 8e-29 seq173230 86.0 5e-12 >seq6932 Length=2340 Score = 235 bits (260), Expect = 5e-57 Identities = 784/1206 (65%), Gaps = 24/1206 (2%) Strand=Plus/Plus Query 53367 ACCCTTGTGTATCGCATTCAAAAGATCTCCGTTGTCCGCGTCGATTTCCCACGCAAACAA 53426 |||| ||| || ||||||| ||||| ||||| || |||||||||||||| ||||| | Sbjct 253 ACCCATGTTCATGGCATTCAGTAGATCACCGTTATCAGCGTCGATTTCCCAAGCAAAGAG 312 Query 53427 TCCACCGAGATCGTTTTCAATCACATACTGGCCCTTGTCTAGCACGGAATCGATGC--TG 53484 ||||| || | ||| | ||||||| | ||||| || | || || || | || || Sbjct 313 ACCACCTAGTTTGTTATTTCTCACATATTTACCCTTTTCAATAACTGA-TCTA-GCATTG 370 Query 53485 TCGTAACTGATTAAATCGCCAGAGTTTTTAT----TGAATACAAACGCTGCTTTGGCTGT 53540 || || | | | || |||| || || |||| ||| | | |||| ||| Sbjct 371 TCATAGGTTACAAGGTCTCCAG----TTGATGGTCTGAAGACATAAGGAGCTTGGGCGAC 426 Query 53541 AGTGTCGTAAGTGTAAT--CGTATTGA--TGGCCAATTTT-TTCGTCAATTTTTCGGTAA 53595 | |||||||| || ||| | ||| || ||| || |||| |||| | | |||| Sbjct 427 ATTGTCGTAA-TGAAATTCCCACTTGCCTTGAGCAACTTCATTCG-CAATCTCCCTGTAA 484 Query 53596 TCAACGACTCCGTCTTCCCATGTGCCTGTAACAGGGCCAGTTGCCACACCGGTGAACGGA 53655 ||||| |||||||||| ||| || ||| | ||||| ||||| || || ||||| ||| Sbjct 485 TCAACCACTCCGTCTTGCCAAGTACCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAGGGA 544 Query 53656 TTGTCATCGCGGTAGCCGCTCACTCCAGTCCAACCGCGCCCGTACATCGCCACTCCGAGA 53715 ||| || ||| | || ||||||||||| || || ||||| || || || | Sbjct 545 ATGTTGTCTTCGTAATCATGAACGCCAGTCCAACCACGACCATACATGGCAACACCTACT 604 Query 53716 ACAATTTTTTCCTGTTGAACTTTTTGTTCGAGCAACGCGCGCACGGCAACATCGGCCGTG 53775 ||||| || | | | ||| ||| | | ||| || | | || | ||| Sbjct 605 ACAATCTTCTTAGGATTCACTCCCTGTGCCAACAAGTATTTTACTCCGAAGTCAGATGTG 664 Query 53776 TAATGCTCGCTGGGAGACCAAACCGGCGCGTAAATCGCCGTTTGATGTCCCAAATCGGTG 53835 ||| || ||||| ||| | |||||||| | | ||||||||||| | | Sbjct 665 TAAGTTTCCTTGGGACTCCATGCAGGCGCGTACAATGGTGTTTGATGTCCAAGAGTATCA 724 Query 53836 TTTGACCAAGCGCCTTTAAAATCATACGACATTaaaaaaaTTCTGTCCAGGTATTGTTGG 53895 |||||||| || || || || ||||| ||| || ||||| |||| || | ||| Sbjct 725 TTTGACCAGGCTCCCTTGAAGTCATAACTCATCAAGAAAATATGATCCATATAATTTTGA 784 Query 53896 GCGTCGCGATAGTTGACGACCGCAATTTTATCATTGCCTGCACTGATTGCGCTAGTCAAC 53955 || | || |||| || || |||||||| || | || || || ||| || Sbjct 785 GCCTTGCCGTAGTCAACAACTTGGATTTTATCCCATCCAGAGCTAATAGCAGAAGTTAAT 844 Query 53956 TCGAACTTTCGT-CCAGTTTCCAATTCCAATTGATCCAACATTTGTCGCAACTCTTTTAA 54014 ||| | |||| | ||| | | | | | ||| | ||| | || || ||||| | Sbjct 845 TCGTA-TTTCTTACCATTCTTAGCTGAGAGCTCATCGAGCATCTCACGTAATTCTTTCAT 903 Query 54015 CAACACCACATACGTTAAACTATCTTTTTGAGGATCGCCCACGGACGGATTGGCACCGTT 54074 ||| ||||| || ||||| | | | || | | | || ||||| || Sbjct 904 CAAACTTACATAACAATCACCATCTTCTGGGCTACCGAGATCAG---GGTTAGCACCTTT 960 Query 54075 TCCGCCAGGAAACTCCCAATCGACGTCGACACCATCAAAAAATTTCCACGTCAATAGGAA 54134 || ||||| ||||||||||||| || ||||||||||| |||||||| || | || || Sbjct 961 ACCACCAGGGAACTCCCAATCGATATCAACACCATCAAAGAATTTCCATGTTAGAAGAAA 1020 Query 54135 TTCGCGCACGGAATCCACAAACACTTTGCGTTTGGAAGAATCGTGGAAATGGTAAAACGG 54194 || || || | |||||| | | | || || || ||| | | || || Sbjct 1021 CTCCTTAACTGACTGCACAAATCGTGTTCTCTTAGATTTGTCAACTAAAAAGAAGAAAGG 1080 Query 54195 ATCCGATAACGTCCAACCGCCGATTGACGGTAATACTTTGACGTTGGGATTCGCTTTTTT 54254 ||| | | |||||| || || || || || | | || | | || |||| ||| Sbjct 1081 ATCGGCGAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAATTCAGGGCGGGCTTGTTT 1140 Query 54255 CACGGCCATAATCTGTCCAAAATTGCCTTTATACGGTTCGTTCCAGGCGGAGACGCCTTT 54314 | | ||| | || ||||| |||||||| || || |||||||| | || | ||||| Sbjct 1141 TAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCACGAAGACAATCCTTT 1200 Query 54315 TTGCGGTTTTTGCACCGCCGCCCAAGGATCATGGATGGCTACTTTAAAATCCGACCGGCC 54374 ||| |||||||| | || ||||| ||||| ||||| | ||||| || ||| ||||| Sbjct 1201 TTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTCACGGCC 1260 Query 54375 AGCGCAAGATCTTTGTAGAGCTTCAAAACTGCCCGGTATAGTTTTTAAACTGTCATTTAT 54434 || || | || || |||| |||||||| || |||||| ||||||||||| Sbjct 1261 GCTACAGGACCGCTGCAGTGCTTGGAAACTGCCTTCGATCTCTTTTAAGCTGTCATTTAT 1320 Query 54435 TCCGTCGCCGCCGCAAATTGGCACAAAACCGTACAAAAGATGCGTCAAATTAGGCACGGG 54494 || || |||||||||||||| | ||| || || | | ||| || | |||||| | || Sbjct 1321 GCCATCACCGCCGCAAATTGGAATAAAGCCATAGAGCAAATGAGTAAGATTAGGTATAGG 1380 Query 54495 CACTTTGTCCATTGGAAAATTTCGTCCGTACACTCCCCATTCTACAAAATAGGCGGCCAC 54554 | |||| || || |||| || || ||||||||||| || |||||| | || Sbjct 1381 TATACGATCCACGGGGAATTTTCTAGGATAGACACCCCATTCTACGAAGTAGGCGCCTAC 1440 Query 54555 AACTTT 54560 |||||| Sbjct 1441 AACTTT 1446 >seq6747 Length=1699 Score = 172 bits (190), Expect = 5e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || || || ||| | |||||||| ||||||||||| || Sbjct 1549 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACTCTGGAAGTGGAACCCTCT 1490 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| ||||| ||||||||||| ||||| || || ||||| Sbjct 1489 GATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCGCCTGATCAG 1430 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || || |||||||||||| | || ||||||| |||||| Sbjct 1429 CAGCGTCTTATCTTCGCTGGAAAGCAATTGGAAGACGGCCGCACTCTTTCCGACTACAAC 1370 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | || ||||| |||||| | || ||||| || Sbjct 1369 ATTCAAAAAGAATCTACTCTTCACTTGGTATTGCGTCTTCGTGGTGGAAT 1320 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| || || || || | ||||| | ||||| ||| | || Sbjct 1093 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACAATTACGTTAGAAGTTGAAGCCTCT 1034 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||||| ||||||||||| ||||| ||||| ||||| Sbjct 1033 GACACAATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 974 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || ||||||||||| || || | || |||||||| Sbjct 973 CAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTTTGTCAGATTACAAT 914 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||| ||| | || ||||| | ||| |||| || || || Sbjct 913 ATTCAGAAAGAGTCCACCCTTCACTTGGTACTCCGTCTGCGAGGAGGTAT 864 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| || || || | || || | || || ||||| || Sbjct 1321 ATGCAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACCTTAGAGGTAGAACCATCG 1262 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||| || |||||||||||||| || || || || ||| Sbjct 1261 GACACTATTGAAAACGTGAAGGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGACCAA 1202 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || || |||||| ||||||| | || | || ||||| ||| Sbjct 1201 CAAAGGCTCATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACACTATCTGATTATAAC 1142 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || || ||||||| || |||||| | || || || || Sbjct 1141 ATTCAAAAGGAATCTACTCTACATTTAGTATTGCGTCTTCGTGGCGGTAT 1092 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| || || || || || |||| || | ||||||||||| || Sbjct 865 ATGCAGATCTTTGTAAAGACACTCACAGGGAAAACTATCACATTAGAAGTGGAACCATCA 806 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| || || |||||||| || || || || || |||||| Sbjct 805 GACACTATTGAAAATGTTAAAGCCAAGATACAAGACAAGGAGGGTATTCCCCCAGATCAA 746 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| |||| | || || || || |||| || || || | || || ||||| Sbjct 745 CAACGTCTAATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGTACTCTCTCTGACTACAAT 686 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 ||||| || ||||| || || || ||||| || ||| Sbjct 685 ATTCAGAAAGAGTCCACTTTGCACTTGGTATTACGT 650 Score = 105 bits (116), Expect = 6e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 ||||| ||||||||||||||||| || || |||||||| ||| | || | ||| ||||| Sbjct 1693 AAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAACAACGTCTTATTTTCGCGGGCAAG 1634 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 ||||| ||||| || || |||| || |||||||| ||||| || || || || ||| Sbjct 1633 CAATTAGAAGATGGTCGTACACTTTCTGACTACAACATCCAAAAAGAATCTACTTTGCAT 1574 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || | ||||| | ||||| || Sbjct 1573 TTAGTACTTCGTTTAAGAGGTGGTAT 1548 >seq4418 Length=3433 Score = 141 bits (156), Expect = 8e-29 Identities = 181/247 (73%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| ||||| ||||| |||||||| | ||||||||| | || Sbjct 178 ATGCAAATTTTTGTTAAAACACTGACTGGCAAAACTATTACTTTAGAAGTGGAAGCATCT 237 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||| ||||||||||| |||||||| || || || ||| Sbjct 238 GACACAATCGAAAATGTTAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGACCAA 297 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | |||||| || ||| ||||||| | || | || || || || Sbjct 298 CAAAGATTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGCACACTGTCAGACTATAAT 357 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAAACACT 27227 ||||| ||||| ||||| || || ||||| ||||| | ||||||| || ||| | | Sbjct 358 ATTCAGAAGGAATCGACTTTGCACTTGGTGCTGCGTCTTAGGGGTGGAAT-GCAA--ATT 414 Query 27228 TTTGTAA 27234 ||||||| Sbjct 415 TTTGTAA 421 Score = 141 bits (156), Expect = 8e-29 Identities = 181/247 (73%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || |||||||| || ||||| |||||| |||| || | ||||||||| | || Sbjct 406 ATGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACATTGGAAGTGGAAGCTTCT 465 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || ||||||||||||||| ||||| || || || || ||| Sbjct 466 GATACAATAGAAAATGTTAAGGCAAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 525 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||||||||| |||||||| | || | || ||||| || Sbjct 526 CAGAGACTGATTTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTATCTGATTATAAT 585 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAAACACT 27227 |||||||| || || || || || || ||| ||||| | ||||||| || ||| | | Sbjct 586 ATTCAAAAAGAATCTACTTTGCACTTAGTTCTGCGTCTAAGGGGTGGAAT-GCAA--ATT 642 Query 27228 TTTGTAA 27234 ||||||| Sbjct 643 TTTGTAA 649 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||||||||| || || |||||| |||||||||||||||| || || || Sbjct 634 ATGCAAATTTTTGTAAAAACACTTACAGGCAAGACTATTACTCTTGAAGTTGAGCCTTCT 693 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || |||||||||||| || || || || || || || ||| Sbjct 694 GATACAATTGAAAATGTTAAGGCAAAAATTCAAGATAAGGAGGGGATTCCCCCAGACCAA 753 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || |||||| | ||||| | || | || || ||||| Sbjct 754 CAGAGGCTTATTTTTGCAGGAAAACAACTTGAAGATGGACGCACACTGTCAGACTACAAT 813 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || ||||| || || || | || || | ||||| || Sbjct 814 ATTCAAAAGGAATCTACCTTGCACTTAGTACTACGACTGAGAGGTGGAAT 863 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| ||||| ||||| |||| || | ||||| ||| | || Sbjct 862 ATGCAAATTTTCGTGAAAACGCTGACTGGCAAAACTATCACATTGGAAGTAGAAGCTTCT 921 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | ||||| ||||||||| |||||||||||||| || || || ||| Sbjct 922 GATACAATAGAAAATGTCAAGGCAAAAATTCAGGACAAAGAAGGCATTCCCCCAGACCAA 981 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||| || ||| | ||||| | || | || |||||||| Sbjct 982 CAGAGATTGATTTTTGCCGGTAAGCAACTTGAAGATGGAAGAACATTATCTGATTACAAT 1041 Query 27168 ATTCAAAAGGAGTCGACC 27185 ||||| || || || ||| Sbjct 1042 ATTCAGAAAGAATCTACC 1059 >seq173230 Length=587 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || || | |||||| | ||||| ||||| ||| Sbjct 110 ATGCAGATTTTCGTGAAAACACTCACTGGTAAAACCATTACTTTGGAAGTTGAACCTTCC 51 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACC 27097 ||| | ||||| | || ||| |||||||||||||| |||||||| || Sbjct 50 GACACTATTGAAAATGTAAAAGCGAAAATTCAAGACAAGGAAGGCATTCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433265038398539