Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq6747 87.8 1e-12 seq4418 87.8 1e-12 >seq6747 Length=1699 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| |||||||| ||| ||||| | || || ||| | | Sbjct 1093 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACAATTACGTTAGAAGTTGAAGCCTCT 1034 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || | ||| || || ||||| |||||||| || | || || | Sbjct 1033 GACACAATTGAAAAT--GTAAAGGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATC 976 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| || || |||||||| || | |||| ||||| ||||||| Sbjct 975 AGCAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTTTGTCAGATTACA 916 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || || |||||| ||| | || ||||| | ||| |||| || || Sbjct 915 ATATTCAGAAAGAGTCCACCCTTCACTTGGTACTCCGTCTGCGAGGAGG 867 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || ||||| || |||||||| || ||| || || | || || ||| | Sbjct 1322 AATGCAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACCTTAGAGGTAGAACCATC 1263 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| | | || || || ||| || |||||||||||| |||| || || Sbjct 1262 GGACACTATTGAAAACGTGAAGGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGACCA 1203 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 ||| || | |||||||| ||||||||| |||| || | || | | || ||||| || Sbjct 1202 ACAAAGGCTCATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACACTATCTGATTATAA 1143 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||| ||||| || ||| | ||||| || |||||| | |||||||| Sbjct 1142 CATTCAAAAGGAATCTACTCTACATTTAGTATTGCGTCTTCGTGGCGG 1095 >seq4418 Length=3433 Score = 87.8 bits (96), Expect = 1e-12 Identities = 154/222 (69%), Gaps = 12/222 (5%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCA-C 27848 |||||||||||||| ||||| || ||||| ||| |||||| | || || | ||||| | Sbjct 178 ATGCAAATTTTTGTTAAAACACTGACTGGCAAAACTATTACTTTAGAAGT-GGAAGCATC 236 Query 27849 CGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 ||| ||||||| || || ||| || ||||| ||||| |||| Sbjct 237 TGAC-----ACAATCGAAAATGTTAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCA 291 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || ||| | || ||||| |||||||| ||| |||| || | ||||| |||| || Sbjct 292 GACCAACAAAGATTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGCACACTGTCAGAC 351 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 || || || || || || |||||||| ||||| ||||| Sbjct 352 TATAATATTCAGAAGGAATCGACTTTGCACTTGGTGCTGCGT 393 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| || || || ||||| || ||| ||| | || || ||| | Sbjct 405 AATGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACATTGGAAGTGGAAGCTTC 464 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| || || |||||| ||||| |||||| |||| || Sbjct 465 TGATACAATAGAAAAT--GTTAAGGCAAAAATTCAAGACAAGGAAGGTATTCCTCCAGAC 522 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || | | ||||| ||||| ||||| ||||| || | ||||| | || ||||| Sbjct 523 CAACAGAGACTGATTTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTATCTGATTAT 582 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 || || |||||||| |||||||| || ||| ||||| Sbjct 583 AATATTCAAAAAGAATCTACTTTGCACTTAGTTCTGCGT 621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354506964934821