Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq6747 156 1e-32 seq4418 145 2e-29 >seq6747 Length=1699 Score = 156 bits (172), Expect = 1e-32 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || ||||| || || ||||| ||||||||||| | || || | ||||||||||| || Sbjct 1119 TGTAGAGTAGATTCCTTTTGAATGTTATAATCAGATAGTGTACGGCCATCTTCCAGTTGT 1178 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || || || || | ||||||||| || |||| ||||| ||||| ||||||||| Sbjct 1179 TTTCCAGCAAAAATGAGCCTTTGTTGGTCTGGGGGAATACCTTCTTTGTCTTGGATCTTT 1238 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||||||||||| || ||||| || ||| ||||| | ||||| || ||||| || Sbjct 1239 GCCTTCACGTTTTCAATAGTGTCCGATGGTTCTACCTCTAAGGTGATGGTTTTTCCTGTA 1298 Query 211092 AGAGTCTTTACAAACACCTGCATT 211115 |||||||| ||||| | ||||||| Sbjct 1299 AGAGTCTTAACAAAGATCTGCATT 1322 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | | || | ||||||||| || |||||||| ||||| || || | ||| || Sbjct 1328 ACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGAGT 1387 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || ||||||| ||||| || ||||||||||| || || || ||||| || | || Sbjct 1388 GCGGCCGTCTTCCAATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCC 1447 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 || ||||| ||||| || ||| || ||||| || || |||||| ||| || || || Sbjct 1448 CTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCCAG 1507 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || |||||||| || || || || ||||| | |||||| Sbjct 1508 AGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1549 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || | || | ||| || |||||||||||||| || |||| || || Sbjct 417 CGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCCGACAGAGTG 476 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||| |||| ||| || || || ||||| || || |||||||| || |||| || Sbjct 477 CGGCCATCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCCC 536 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||| || ||||||||| || || |||||||| ||||| || || ||||| | | Sbjct 537 TCCTTATCTTGGATCTTTGCCTTAACATTTTCGATAGTGTCGGATGGCTCCACCTCCAAA 596 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || || || ||||| ||||| | |||||| Sbjct 597 GTGATAGTTTTCCCAGTAAGTGTCTTAACAAAGATCTGCAT 637 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| | |||||||||||| || || || || || | || || | ||||| |||||||| Sbjct 662 GTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAGAGAGTACGACCATCCTCCAGCTG 721 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || || || || |||||||| || || |||| || |||||||| || ||||| Sbjct 722 CTTACCAGCAAAAATTAGACGTTGTTGATCTGGGGGAATACCCTCCTTGTCTTGTATCTT 781 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || ||||| || ||||| || ||| || || | ||||| || || || || Sbjct 782 GGCTTTAACATTTTCAATAGTGTCTGATGGTTCCACTTCTAATGTGATAGTTTTCCCTGT 841 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||||||||| | |||||| Sbjct 842 GAGTGTCTTTACAAAGATCTGCAT 865 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| ||||||||||| || || || ||||| | | || | |||||| Sbjct 882 AGTACCAAGTGAAGGGTGGACTCTTTCTGAATATTGTAATCTGACAAAGTGCGACCATCT 941 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||| || || |||||||| || || || ||||| || | || || ||||| Sbjct 942 TCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCT 1001 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || || ||||| || ||||||||| |||||| || | || || || Sbjct 1002 TGGATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCAACTTCTAACGTAATTGTT 1061 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || || ||||| | ||||| Sbjct 1062 TTTCCAGTAAGTGTTTTAACAAAAATTTGCAT 1093 Score = 102 bits (112), Expect = 2e-16 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| || |||||||||||||| || || | ||| || | |||||||| | |||||||| Sbjct 1580 AGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGTGTACGACCATCTTCTAATTGCTTGCC 1639 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||||| ||||| |||||||| || ||||||| ||||| ||||| ||||| || Sbjct 1640 CGCGAAAATAAGACGTTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGGATTTT 1693 >seq4418 Length=3433 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| | ||| || |||||||| || |||||||| | || || | ||||||| Sbjct 617 AGAACTAAGTGCAAAGTAGATTCTTTTTGAATATTATAATCAGATAGAGTGCGTCCATCT 558 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| ||||| ||||| || || | |||||||| ||||||| ||||||||||| Sbjct 557 TCCAACTGTTTGCCGGCGAAAATCAGTCTCTGTTGGTCTGGAGGAATACCTTCCTTGTCT 498 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || ||| || || ||||| || || ||||| ||| || || | ||||| ||| Sbjct 497 TGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAATGTGATAGTC 438 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || ||||||||||| | |||||| Sbjct 437 TTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 405 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| | ||| || || || || || ||||| || | || || | ||||||| Sbjct 389 AGCACCAAGTGCAAAGTCGATTCCTTCTGAATATTATAGTCTGACAGTGTGCGTCCATCT 330 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||| ||||| || ||||| || | | ||||||||| ||||||| ||||||||||| Sbjct 329 TCCAGTTGCTTTCCGGCGAAAATCAATCTTTGTTGGTCTGGAGGAATGCCTTCCTTGTCT 270 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||| || || |||||||| |||||||| ||| || || | ||| || || Sbjct 269 TGAATCTTTGCCTTAACATTTTCGATTGTGTCAGATGCTTCCACTTCTAAAGTAATAGTT 210 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || ||||| | ||||| Sbjct 209 TTGCCAGTCAGTGTTTTAACAAAAATTTGCAT 178 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| || ||||||||||| || || ||||| || || || ||||| | | || ||| Sbjct 1079 AGTCTGAGAACAAGGTGAAGGGTAGATTCTTTCTGAATATTGTAATCAGATAATGTTCTT 1020 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||| || ||||| || || || || | | |||||||| || |||| ||||| Sbjct 1019 CCATCTTCAAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGGGGAATGCCTTCT 960 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||| || ||| || || ||||| || || ||||| ||| || || | ||| Sbjct 959 TTGTCCTGAATTTTTGCCTTGACATTTTCTATTGTATCAGAAGCTTCTACTTCCAATGTG 900 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || || || || || || || | |||||| Sbjct 899 ATAGTTTTGCCAGTCAGCGTTTTCACGAAAATTTGCATT 861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1154510522474895