Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq119932 107 2e-18 seq4418 87.8 2e-12 seq6747 86.0 5e-12 >seq119932 Length=1883 Score = 107 bits (118), Expect = 2e-18 Identities = 222/327 (68%), Gaps = 4/327 (1%) Strand=Plus/Plus Query 14716 ATTTGATAGCTACAACGATTACGTGGTGGCGGCGACATATTTTGACGGAAAGAAGGTGAA 14775 ||||||| ||||| |||||| | ||||| | |||||||| |||| | || Sbjct 616 ATTTGATCAATACAATGATTACATTGTGGCTTTAAATTATTTTGATTCAAAGGCTATTAA 675 Query 14776 CTACAACAGCGGTTTGTTTTACTATGTTCTGTGGAAATTGTGCAGCGCCAAAAAGTGGAT 14835 ||||||| ||||||||||| ||||| |||||||| | || | ||||| ||||| Sbjct 676 ATACAACAAGGGTTTGTTTTATTATGTACTGTGGAAGATATGTGATGGTAAAAAATGGAT 735 Query 14836 GAACCAAAATGTGCTTGACCAATT--TTGGAAATACGTTAAACTTCGCTTACAAAACACT 14893 | ||| |||||| | || |||| | | ||| ||||| | |||| || || Sbjct 736 GGACCGAAATGTTGTAGAAAAATTCAAAGAATATATGTTAAGGCGTG-TTACCGAA-ACA 793 Query 14894 ACATGCAAGCTAGGTCTTTCGTCGCTTCCTATGGACCCGCCCATGAAAACATCACTACTA 14953 | |||| | | ||||| | || |||||| |||| || || |||| ||||| | Sbjct 794 AAATGCTATATTGGTCTGACCTCCCTTCCTTTGGATCCCTTAATACAAACGTCACTGCCT 853 Query 14954 ACAGCCCTGTGGTACTGTGTTGAGTTGTCGTCCGACATATTTAAACACGACCAATTACAT 15013 |||| || ||||| ||||| || | || || ||||||||||| |||| | ||| Sbjct 854 GCAGCGCTCTGGTATTGTGTAGAAATTTCATCATACATATTTAAAGACGATGACGACCAT 913 Query 15014 TACACCAATGAAAGACTGCGACTTTAT 15040 ||| |||| ||||| ||| | |||| Sbjct 914 TACTCCAAAGAAAGGTTGCAAAATTAT 940 >seq4418 Length=3433 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 ||||| || ||||| ||||| | | ||||| | | || ||||| || || || ||||| Sbjct 1052 TCTTTCTGAATATTGTAATCAGATAATGTTCTTCCATCTTCAAGTTGCTTACCGGCAAAA 993 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGT-TTGAGCGT 39212 || | | ||| ||||| | ||| | || ||||||||| ||| ||| || |||| | Sbjct 992 ATCAATCTCTGTTGGTCTGGGGGAATGCCTTCTTTGTCC-TGAATTTTTGCCTTGACATT 934 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | ||||| | || || |||| |||||| |||| || ||||||||||| || Sbjct 933 TTCTATTGTATCAGAAGCTTCTACTTCCAATGTGATAGTTTTGCCAGTCAGCGTTTTCAC 874 Query 39273 AAAGATTTGCAT 39284 || |||||||| Sbjct 873 GAAAATTTGCAT 862 >seq6747 Length=1699 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || || |||||||| || || || |||| ||| || || || Sbjct 1335 CGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCG 1394 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | || || || || || |||||||||||||| || | || | || ||||||| Sbjct 1395 TCTTCCAATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCTTTG 1454 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || |||||| ||| | | | | ||||| | ||||| |||| || || Sbjct 1455 TCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGAGTAATG 1514 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| || || ||||||||||| || ||||| Sbjct 1515 GTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427909514905499