Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq6747 140 2e-28 seq4418 114 9e-21 seq173230 86.0 4e-12 >seq6747 Length=1699 Score = 140 bits (154), Expect = 2e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||||||||| || ||||| || || ||||| ||||| || || | Sbjct 1549 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACTCTGGAAGTGGAACCCTCT 1490 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| ||||| ||||| |||||||| || | ||||| ||||| Sbjct 1489 GATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCGCCTGATCAG 1430 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || ||| ||||||||| |||||| | ||| |||||| Sbjct 1429 CAGCGTCTTATCTTCGCTGGAAAGCAATTGGAAGACGGCCGCACTCTTTCCGACTACAAC 1370 Query 23791 ATACAAAAAGAGTCCAC 23807 || |||||||| || || Sbjct 1369 ATTCAAAAAGAATCTAC 1353 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| |||||||| || || |||||||| || || | |||||||| || | Sbjct 1093 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACAATTACGTTAGAAGTTGAAGCCTCT 1034 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| |||| ||||| |||||||| || | || || ||||| Sbjct 1033 GACACAATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 974 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| || || ||| ||||||| | |||||||| |||||||| Sbjct 973 CAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTTTGTCAGATTACAAT 914 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || ||||||||||| | || || || | | |||||||||| Sbjct 913 ATTCAGAAAGAGTCCACCCTTCACTTGGTACTCCGTCTGCGAGGAGG 867 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || ||||| || || || |||||||| ||||| | || || || | | Sbjct 1322 AATGCAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACCTTAGAGGTAGAACCATC 1263 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||||| |||||| | || ||| || |||||||||||| | || ||||| || Sbjct 1262 GGACACTATTGAAAACGTGAAGGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGACCA 1203 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || |||||||||||||| | || || || ||||| || Sbjct 1202 ACAAAGGCTCATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACACTATCTGATTATAA 1143 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| ||||| || || || |||||||||| || Sbjct 1142 CATTCAAAAGGAATCTACTCTACATTTAGTATT 1110 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || ||||| ||||| | ||||| || | | Sbjct 865 ATGCAGATCTTTGTAAAGACACTCACAGGGAAAACTATCACATTAGAAGTGGAACCATCA 806 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||||| | ||||| | || | | ||||| || ||| | || |||||||| Sbjct 805 GACACTATTGAAAATGTTAAAGCCAAGA-TACAAGACAAGGAGGGTATTCCCCCAGATCA 747 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| |||| ||||| || || || ||||| || | || ||| | || ||||| Sbjct 746 ACAACGTCTAATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGTACTCTCTCTGACTACAA 687 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || ||||||||||| || || || || ||| | | ||||||| Sbjct 686 TATTCAGAAAGAGTCCACTTTGCACTTGGTATTACGTCTAAGAGGAGG 639 Score = 82.4 bits (90), Expect = 5e-11 Identities = 90/118 (76%), Gaps = 4/118 (3%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||||||||| | || ||||||||||| ||| | || || || ||||| ||| | ||| Sbjct 1684 GACAAAGAAGGCATTCCTCCAGATCAACAACGTCTTATTTTCGCGGGCAAGCAATTAGAA 1625 Query 23764 GACGAACG--CACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGT 23819 || | || |||||| || |||||||| |||||||| || || || |||||||| Sbjct 1624 GATGGTCGTACACTTT--CTGACTACAACATCCAAAAAGAATCTACTTTGCATTTAGT 1569 >seq4418 Length=3433 Score = 114 bits (126), Expect = 9e-21 Identities = 154/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || || || || || || || || ||||| | ||||| || | | Sbjct 405 AATGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACATTGGAAGTGGAAGCTTC 464 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || | |||| | |||| |||||| || ||||| |||||| | || ||||| | Sbjct 465 TGATACAATAGAAAATGTTAAGGCAAAAA-TTCAAGACAAGGAAGGTATTCCTCCAGACC 523 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||| | | || || ||||||||||| ||||||| | ||||||| || ||||| | Sbjct 524 AACAGAGACTGATTTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTATCTGATTATA 583 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820 | || |||||||| || || || || |||||| Sbjct 584 ATATTCAAAAAGAATCTACTTTGCACTTAGTT 615 Score = 109 bits (120), Expect = 4e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| ||||| || || || ||||| ||||| | ||||| || | | Sbjct 861 AATGCAAATTTTCGTGAAAACGCTGACTGGCAAAACTATCACATTGGAAGTAGAAGCTTC 920 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | |||| | || ||||||| ||||||||||| | || ||||| || Sbjct 921 TGATACAATAGAAAATGTCAAGGCAAAAATTCAGGACAAAGAAGGCATTCCCCCAGACCA 980 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || || |||||||| || ||||| ||||| | | | || ||| |||||||| Sbjct 981 ACAGAGATTGATTTTTGCCGGTAAGCAACTTGAAGATGGAAGAACATTATCTGATTACAA 1040 Query 23790 CATACAAAAAGAGTCCAC 23807 || || ||||| || || Sbjct 1041 TATTCAGAAAGAATCTAC 1058 Score = 93.3 bits (102), Expect = 3e-14 Identities = 121/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| |||||||| || || || ||||| || ||| | ||||| || | | Sbjct 178 ATGCAAATTTTTGTTAAAACACTGACTGGCAAAACTATTACTTTAGAAGTGGAAGCATCT 237 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| | |||| |||| | || ||||| ||||| | || ||||| || Sbjct 238 GACACAATCGAAAATGTTAAGGCAAAGA-TTCAAGACAAGGAAGGCATTCCTCCAGACCA 296 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC 23774 ||| | || || || ||||| || ||||||||||| | |||||| Sbjct 297 ACAAAGATTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGCAC 341 >seq173230 Length=587 Score = 86.0 bits (94), Expect = 4e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| ||||| ||||| || ||||| || ||| | |||||||| | Sbjct 113 AAAATGCAGATTTTCGTGAAAACACTCACTGGTAAAACCATTACTTTGGAAGTTGAACCT 54 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGG 23714 | |||||| |||||| ||||| |||||| ||||| ||||| Sbjct 53 TCCGACACTATTGAAAATGTAAAAGCGAAAATTCAAGACAAGGAAGG 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 336722164001684