Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4418 152 1e-31 seq6747 134 3e-26 seq11685 123 6e-23 >seq4418 Length=3433 Score = 152 bits (168), Expect = 1e-31 Identities = 162/214 (76%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || | ||| | ||| ||||||||||| | ||| ||||| | | ||| | ||||| Sbjct 618 CAGAACTAAGTGCAAAGTAGATTCTTTTTGAATATTATAATCAGATAGAGTGCGTCCATC 559 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| | ||| || || ||||| || |||| |||||||| || ||||||||||||||||| Sbjct 558 TTCCAACTGTTTGCCGGCGAAAATCAGTCTCTGTTGGTCTGGAGGAATACCTTCCTTGTC 499 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||| || ||| ||| ||| ||| || || || || | |||||| || || ||||| || Sbjct 498 TTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAATGTGATAGT 439 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||| |||| || |||| || | ||||||| Sbjct 438 CTTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 405 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||| | ||| || | ||| | ||| ||||| || || | ||| || || | || || | Sbjct 396 AAGACGCAGCACCAAGTGCAAAGTCGATTCCTTCTGAATATTATAGTCTGACAGTGTGCG 337 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||||| || ||||| || ||||| || | || ||||||||| || ||||| ||||| Sbjct 336 TCCATCTTCCAGTTGCTTTCCGGCGAAAATCAATCTTTGTTGGTCTGGAGGAATGCCTTC 277 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 ||||||||| |||||| ||| ||| |||||| ||||| || | |||||| ||||| || Sbjct 276 CTTGTCTTGAATCTTTGCCTTAACATTTTCGATTGTGTCAGATGCTTCCACTTCTAAAGT 217 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| |||| ||||| | || | |||||| Sbjct 216 AATAGTTTTGCCAGTCAGTGTTTTAACAAAAATTTGCAT 178 >seq6747 Length=1699 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| | |||||| ||||| || | |||||| || | | ||| | ||||| || ||||| Sbjct 662 GTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAGAGAGTACGACCATCCTCCAGCTG 721 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||| || || || |||||||| || || |||||||| ||||||||||| ||||| Sbjct 722 CTTACCAGCAAAAATTAGACGTTGTTGATCTGGGGGAATACCCTCCTTGTCTTGTATCTT 781 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||| ||| || |||||||| | |||||| ||||| ||||| || || || || Sbjct 782 GGCTTTAACATTTTCAATAGTGTCTGATGGTTCCACTTCTAATGTGATAGTTTTCCCTGT 841 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 | || |||| || | ||||| Sbjct 842 GAGTGTCTTTACAAAGATCTGCAT 865 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || ||||| ||||| || | ||||||||| | |||||| | |||||| Sbjct 882 AGTACCAAGTGAAGGGTGGACTCTTTCTGAATATTGTAATCTGACAAAGTGCGACCATCT 941 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| ||||| |||||||| || || || || || || || || || |||||| Sbjct 942 TCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCT 1001 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||| ||| ||| || ||||| |||| ||| || |||||||| || || Sbjct 1002 TGGATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCAACTTCTAACGTAATTGTT 1061 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | ||||| | || | |||||| Sbjct 1062 TTTCCAGTAAGTGTTTTAACAAAAATTTGCAT 1093 Score = 132 bits (146), Expect = 1e-25 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || ||||| ||||| ||||| | || ||||| | | || Sbjct 1100 ACGAAGACGCAATACTAAATGTAGAGTAGATTCCTTTTGAATGTTATAATCAGATAGTGT 1159 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || || || ||||| || || || | ||||||||| || |||||||| Sbjct 1160 ACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATGAGCCTTTGTTGGTCTGGGGGAATACC 1219 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||||||||||||| |||||| ||| || ||||| || | ||| || ||||| Sbjct 1220 TTCTTTGTCTTGGATCTTTGCCTTCACGTTTTCAATAGTGTCCGATGGTTCTACCTCTAA 1279 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || || || || | ||| || | || | |||||| Sbjct 1280 GGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCATT 1322 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || | || | ||| ||||||||||||| ||||| || | || ||| Sbjct 417 CGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCCGACAGAGTG 476 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || | ||| || ||||| ||||| || || |||||||| || ||||| || Sbjct 477 CGGCCATCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCCC 536 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| |||||||||||| ||| ||| |||||| ||||| || | ||||| || || Sbjct 537 TCCTTATCTTGGATCTTTGCCTTAACATTTTCGATAGTGTCGGATGGCTCCACCTCCAAA 596 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||| || || || || Sbjct 597 GTGATAGTTTTCCCAGT 613 Score = 125 bits (138), Expect = 2e-23 Identities = 154/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| ||||| ||||||||||| | ||||| |||| | ||| Sbjct 1328 ACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGAGT 1387 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| | ||||| |||||||||||||| || || || || ||||| || || Sbjct 1388 GCGGCCGTCTTCCAATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCC 1447 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 || ||||||||||| ||| || || ||| ||| || || || |||| |||||| || | Sbjct 1448 CTCTTTGTCTTGGAT-TTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCCA 1506 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTT 225698 || || ||||| || || | ||||| Sbjct 1507 GAGTAATGGTCTTTCCAGTTAGGGTTTT 1534 Score = 98.7 bits (108), Expect = 2e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| ||||||||||||| ||||| || | | || | |||||||||| ||||| || Sbjct 1580 AGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGTGTACGACCATCTTCTAATTGCTTGCC 1639 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||||| ||||| |||||||| || || ||||| ||||| ||||||||||| || Sbjct 1640 CGCGAAAATAAGACGTTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGGATTTT 1693 >seq11685 Length=4501 Score = 123 bits (136), Expect = 6e-23 Identities = 145/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 7536 ATTGAGTGGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGAT 7595 ||| | |||| || |||| |||| || |||| |||| || ||||| ||| |||| || Sbjct 2365 ATTAATTGGTGATGACCAAATTTATAATACTATTGTTACCGCTCATGCTTTTATTATAAT 2306 Query 7596 TTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAAT 7655 ||| ||| | ||||| || | || || || || || ||||||||||| ||||| ||||| Sbjct 2305 TTTTTTTATAGTTATACCTATCATAATTGGAGGATTTGGAAATTGATTAGTTCCATTAAT 2246 Query 7656 GATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACC 7715 | || || |||||||| ||||| || | | || |||||||| |||||| | ||||| Sbjct 2245 ACTAGGAGCCCCTGATATAGCTTTCCCCCGAATAAATAATATAAGATTTTGACTTCTACC 2186 Query 7716 GCCTTCCTTATTTCTA 7731 || || ||| || || Sbjct 2185 TCCCTCATTAATTTTA 2170 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| || || ||||||||||| |||| |||||| || | |||||||| ||||| | Sbjct 1773 ATACTTCTGGGTGTCCAAAAAATCAAAATAGATGTTGGTATAAAATAGGATCTCCTCCTC 1832 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 | | ||||||||||| ||||| || |||| ||| ||||||| Sbjct 1833 CGGCAGGATCAAAAAATGAGGTATTTAAGTTTCGATCTGTTAAAA 1877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1187756065450962