Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq6932 215 4e-51 seq4418 100 2e-16 >seq6932 Length=2340 Score = 215 bits (238), Expect = 4e-51 Identities = 634/966 (66%), Gaps = 21/966 (2%) Strand=Plus/Minus Query 109140 CGCGTACTTTGTCGAATGGGGTGTGTACGGCCGCAATTTTCCCGTGGACAAAGTGCCGTT 109199 ||| ||||| || ||||||||||| || | || || |||||||| | || | Sbjct 1435 CGCCTACTTCGTAGAATGGGGTGTCTATCCTAGAAAATTCCCCGTGGATCGTATACCTAT 1376 Query 109200 GCCCAATTTATCGCATTTGCTGTACGGTTTTATTCCAATATGTGGCGGCGACGGCATCAA 109259 || ||| | | |||||||| || || ||||||||||| || ||||| || ||||| || Sbjct 1375 ACCTAATCTTACTCATTTGCTCTATGGCTTTATTCCAATTTGCGGCGGTGATGGCATAAA 1316 Query 109260 CGACGCCCTCAAAACCATTCCCGGCAGTTTTGACGCTTTGCAACGATCGTGCCGCGGTCG 109319 ||| | | ||| || |||||||| | || |||| || || || |||| || Sbjct 1315 TGACAGCTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTGCAGCGGTCCTGTAGCGGCCG 1256 Query 109320 CGACGATTTCAAAGTGTCCATACACGACATTTGGGCCGCGGTGCAAAAACCGCAAAAAGG 109379 || || |||||||| || || ||||| ||||| || | |||||||| |||||||| Sbjct 1255 TGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGG 1196 Query 109380 CGTGACCGCGTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTGATGGCGGCCAAATT 109439 || | ||||||||||||| ||||||||||||||||| ||||| ||| | ||| Sbjct 1195 ATTGTCTTCGTGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACA 1136 Query 109440 GGCAAATCCTCACGTTAAAATTCTACCGTCCATAGGCGGGTGGACGTTGTCGGACCCGTT 109499 || ||| | | || ||||| || || || || ||||||||| | | || || || Sbjct 1135 AGCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTCGCCGATCCTTT 1076 Query 109500 -TTATTTT--ATGCACGATTCGGCGAAAAGAGCCACATTCGTTGAATCGGTGCGCGAATT 109556 || |||| | || | | | || ||| | ||| || | || || || || Sbjct 1075 CTTCTTTTTAGTTGACAAAT---CTAAGAGAACACGATTTGTGCAGTCAGTTAAGGAGTT 1019 Query 109557 TTTACAAGTGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTTCCGGGCGGCAA 109616 | | | | |||||||||||||| || || || || ||||||||||| || || || || Sbjct 1018 TCTTCTAACATGGAAATTCTTTGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGTAA 959 Query 109617 GGGTGCCAATCCGAGTCTCGGCGACGCA-ACGCGCGACAGCAAAACGTACATTGCGTTGT 109675 ||||| || || |||||| | || | | | | | ||| | ||| Sbjct 958 AGGTGCTAACCCTGATCTCGGTAGCCCAGAAGATGGTGATTGTTATGTAAGT----TTGA 903 Query 109676 TAAAAGAGTTGCGCGCCATGTTGGACGACTTGCAAACGGCCACCAA---CAAAACGTACG 109732 | ||||| || || | ||| | || || || | || | || || | |||| Sbjct 902 TGAAAGAATTACGTGAGATGCTCGATGA---GCTCTCAGCTAAGAATGGTAAGAAATACG 846 Query 109733 AATTGACGAGCGCCATTAGCGCCGGTTACGATAAAATTGACGTGGTCGATTACGCGTCGG 109792 |||| || || |||||| | || | |||||||| | || || || |||| || Sbjct 845 AATTAACTTCTGCTATTAGCTCTGGATGGGATAAAATCCAAGTTGTTGACTACGGCAAGG 786 Query 109793 CGCAACAATATTTGGACAAAATATTTTTAATGACATACGATTTCAAAGGCGCTTGGTCAA 109852 | ||| | ||| |||| | || || || |||| || || ||||| || || ||||||| Sbjct 785 CTCAAAATTATATGGATCATATTTTCTTGATGAGTTATGACTTCAAGGGAGCCTGGTCAA 726 Query 109853 ACACGGACT-TAGGCTATCACACGACTGTGTACGCGCCCACGTGGAATCCAAACGAATTG 109911 | ||| | || |||| || | |||||||||| | |||| ||| || ||| Sbjct 725 A-TGATACTCTTGGACATCAAACACCATTGTACGCGCCTGCATGGAGTCCCAAGGAAACT 667 Query 109912 TACACGACCGATGTGGCGGTCAAAGAGCTGTTCAAACAAAAAGTGTCGCCTaaaaaaaTT 109971 ||||| | || | | || ||| | |||| ||| |||| ||||| || ||| Sbjct 666 TACACATCTGACTTCGGAGTAAAATACTTGTTGGCACAGGGAGTGAATCCTAAGAAGATT 607 Query 109972 ATAATTGGCGTAGCGATGTACGGCCGCGGCTGGACGGGCG-TCGTGCACGCCGACGACGC 110030 || | || || || ||||| || || || ||||| |||| || || | ||| ||| Sbjct 606 GTAGTAGGTGTTGCCATGTATGGTCGTGGTTGGACTGGCGTTCATG-ATTACGAAGACAA 548 Query 110031 GAATCCGTTTTTGGGCATCGCCTCCGGTCCCGTGGAAGGCACTTGGGAAAACGGCGTGGT 110090 | ||| || |||| ||| | || || || |||| |||||| || |||| ||||| Sbjct 547 CATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGTACTTGGCAAGACGGAGTGGT 488 Query 110091 GGACTA 110096 || || Sbjct 487 TGATTA 482 >seq4418 Length=3433 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| || || || || | |||||| || ||||| |||||||||||||| || | | Sbjct 860 CCACCTCTCAGTCGTAGTACTAAGTGCAAGGTAGATTCCTTTTGAATATTGTAGTCTGAC 801 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | || |||||| | |||||| || ||| | |||||||| ||||||||| ||| Sbjct 800 AGTGTGCGTCCATCTTCAAGTTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCTGGGGGA 741 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTT 101191 | || || || || ||||||| || |||| | | || || | | | | Sbjct 740 ATCCCCTCCTTATCTTGAATTTTTGCCTTAACATTTTCAATTGTATCAGAAGGCTCAACT 681 Query 101192 TCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 || | |||||||| ||||| || | |||||| | ||||||||||||| Sbjct 680 TCAAGAGTAATAGTCTTGCCTGTAAGTGTTTTTACAAAAATTTGCATT 633 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 101035 GTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTG 101094 ||||||||| ||||||||||||||||| ||||| | | ||| ||||||||| || Sbjct 609 GTGCAAAGTAGATTCTTTTTGAATATTATAATCAGATAGAGTGCGTCCATCTTCCAACTG 550 Query 101095 TTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTT 101154 |||||| || | || || || ||||||||| || | ||||| ||||| |||||| Sbjct 549 TTTGCCGGCGAAAATCAGTCTCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATTTT 490 Query 101155 TTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGT 101214 | || |||| | | || || | | ||| | || ||||| ||||| || Sbjct 489 TGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAATGTGATAGTCTTGCCAGT 430 Query 101215 CAATGTTTTAATAAAAATTTGCATT 101239 || ||| || | ||||||||||||| Sbjct 429 CAGTGTCTTTACAAAAATTTGCATT 405 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 101042 GTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCC 101101 || |||||||| |||||||||||||| | | ||| | |||||| | ||| || || Sbjct 1058 GTAGATTCTTTCTGAATATTGTAATCAGATAATGTTCTTCCATCTTCAAGTTGCTTACCG 999 Query 101102 GCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 101161 ||| | || | || ||||||||| ||| | |||||||||||| ||||||| || Sbjct 998 GCAAAAATCAATCTCTGTTGGTCTGGGGGAATGCCTTCTTTGTCCTGAATTTTTGCCTTG 939 Query 101162 ACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTCAATGTT 101221 |||| | | || || | | | ||| | || ||||||||||| |||| ||| Sbjct 938 ACATTTTCTATTGTATCAGAAGCTTCTACTTCCAATGTGATAGTTTTGCCAGTCAGCGTT 879 Query 101222 TTAATAAAAATTTGCATT 101239 || | |||||||||||| Sbjct 878 TTCACGAAAATTTGCATT 861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408100453604457