Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq4418 149 1e-30 seq6747 109 1e-18 >seq4418 Length=3433 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||||||||| ||||| ||||| ||||| ||||| || || |||||||| | ||| ||| Sbjct 1082 CTGAGTCTGAGAACAAGGTGAAGGGTAGATTCTTTCTGAATATTGTAATCAGATAATGTT 1023 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || |||||||| || || ||||| || || | ||||| ||||| | | || ||| Sbjct 1022 CTTCCATCTTCAAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGGGGAATGCCT 963 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || || ||||||||| |||||| | |||| | || ||| |||||||| | Sbjct 962 TCTTTGTCCTGAATTTTTGCCTTGACATTTTCTATTGTATCAGAAGCTTCTACTTCCAAT 903 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||||||||| || || || |||||||| | |||||| Sbjct 902 GTGATAGTTTTGCCAGTCAGCGTTTTCACGAAAATTTGCATT 861 Score = 114 bits (126), Expect = 3e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 151907 AGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCC 151966 |||||| |||||||| || || ||||| | || ||| | |||||||| | ||| || Sbjct 603 AGTAGATTCTTTTTGAATATTATAATCAGATAGAGTGCGTCCATCTTCCAACTGTTTGCC 544 Query 151967 GGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTT 152026 |||||| || || ||||| ||||| | | || |||||||| |||||||||||| || Sbjct 543 GGCGAAAATCAGTCTCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATTTTTGCCTT 484 Query 152027 GACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGT 152086 ||| | |||| | || ||| || ||||| | || ||||| ||||| || || || Sbjct 483 AACATTTTCTATTGTATCAGAAGCTTCCACTTCCAATGTGATAGTCTTGCCAGTCAGTGT 424 Query 152087 CTTCACGAAGACCTGCATTTTACCCTTA 152114 ||| || || | |||||| |||| || Sbjct 423 CTTTACAAAAATTTGCATTCCACCCCTA 396 Score = 111 bits (122), Expect = 4e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 ||||| || ||||| || ||||| || | | || | |||||||| || ||| || Sbjct 830 GTAGATTCCTTTTGAATATTGTAGTCTGACAGTGTGCGTCCATCTTCAAGTTGTTTTCCT 771 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || ||||||||||| ||||| | | || || ||||| |||||||||||| || Sbjct 770 GCAAAAATAAGCCTCTGTTGGTCTGGGGGAATCCCCTCCTTATCTTGAATTTTTGCCTTA 711 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | | || ||| ||| ||||||||||||||||| ||||| || || || Sbjct 710 ACATTTTCAATTGTATCAGAAGGCTCAACTTCAAGAGTAATAGTCTTGCCTGTAAGTGTT 651 Query 152088 TTCACGAAGACCTGCATTTTACCC 152111 || || || | |||||| |||| Sbjct 650 TTTACAAAAATTTGCATTCCACCC 627 >seq6747 Length=1699 Score = 109 bits (120), Expect = 1e-18 Identities = 152/210 (72%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||||||||| |||||||| |||||||| |||| | ||| | || ||||| | Sbjct 1343 CAAG-TGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCTTCCA 1401 Query 151957 --GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 ||||| || ||||||||||| | |||||| || | || ||| || || || ||||| Sbjct 1402 ATTGCTTT--CCAGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCTTTGTCTTG 1459 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||||| ||| ||| | || | | || || || ||||| |||||||| || || Sbjct 1460 GATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGAGTAATGGTCTT 1519 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || | |||||| Sbjct 1520 TCCAGTTAGGGTTTTAACAAAAATCTGCAT 1549 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| | |||||| ||||||||||||||||| || | | ||| | ||||| Sbjct 426 AGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCCGACAGAGTGCGGCCATCC 485 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| || || ||||| || | ||| ||||| | | || || ||||| ||| Sbjct 486 TCCAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTATCT 545 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || ||| || ||| | || | |||| || ||| || || | ||| |||||| Sbjct 546 TGGATCTTTGCCTTAACATTTTCGATAGTGTCGGATGGCTCCACCTCCAAAGTGATAGTT 605 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || |||| |||||| Sbjct 606 TTCCCAGTAAGTGTCTTAACAAAGATCTGCAT 637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149200669670933