Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq6932 167 2e-36 seq6747 96.9 2e-15 >seq6932 Length=2340 Score = 167 bits (184), Expect = 2e-36 Identities = 771/1210 (64%), Gaps = 45/1210 (4%) Strand=Plus/Plus Query 5735 TGTTACCTA-ACCCTTGATTCATGGAGTTTAACAAGTCGCCGTTGTCCGCGTCGATTTCC 5793 ||||||| | |||| || ||||||| || | | || ||||| || |||||||||||| Sbjct 243 TGTTACCAAGACCCATG-TTCATGGCATTCAGTAGATCACCGTTATCAGCGTCGATTTCC 301 Query 5794 CATCCAAATAGACCCCCCAGCCCCTTTTGGATGACATATTTTCCCTTGGCCGTCACGGAC 5853 || |||| ||||| || || || | | |||||||| ||||| | | || || Sbjct 302 CAAGCAAAGAGACCACCTAGTTTGTTATTTCTCACATATTTACCCTTTTCAATAACTGAT 361 Query 5854 CTCTCGTCGTCGTAGGTGACGAGATCGTC-GTTG-TGGT----ACACGTAGGGCGCTTGC 5907 || | | ||| ||||| || || || | |||| |||| | || || || ||||| Sbjct 362 CTAGCATTGTCATAGGTTACAAGGTCTCCAGTTGATGGTCTGAAGACATAAGGAGCTTGG 421 Query 5908 GCCACTCCGTCGTAAT-----------TCGGGTTGGGATACCGG-TTCGTGATGTCTTTG 5955 || || |||||||| | | ||| | || |||| || || || Sbjct 422 GCGACATTGTCGTAATGAAATTCCCACTTGCCTTGAGCAACTTCATTCGCAATCTCCCTG 481 Query 5956 TAGTCCACGACACCGTTTTCCCAGGAACCCTTTACGGGACCCGTGGCAGTGCCTGTGAAG 6015 || || || || |||| || ||| | ||| || || || || || || ||||||||||| Sbjct 482 TAATCAACCACTCCGTCTTGCCAAGTACCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAG 541 Query 6016 GGATTGTTGT--TGGTGATGTTGTGGATTCCACGCCATCCCCTGCCGTACATGGCCACGC 6073 ||| |||||| | || || || | ||| ||| || | || |||||||| || | Sbjct 542 GGAATGTTGTCTTCGTAATCATGA--ACGCCAGTCCAACCACGACCATACATGGCAACAC 599 Query 6074 CCACCACCAATTTGTTTGGGTTCACGCTCTGATTGAGCAGGCGTTGGACGGCGAACGCGG 6133 | || || | || || || ||||| | ||| | || | || || |||| | | Sbjct 600 CTACTACAATCTTCTTAGGATTCACTCCCTGTGCCAACAAGTATTTTACTCCGAAGTCAG 659 Query 6134 TGGTGTACTTTTCGGTGGGGTTCCATGTGGGCGCGTACAGGGGCGTCTGCAGTCCCAGAT 6193 ||||| |||| |||| |||||| |||||||||| || || || |||| ||| Sbjct 660 ATGTGTAAGTTTCCTTGGGACTCCATGCAGGCGCGTACAATGGTGTTTGATGTCCAAGAG 719 Query 6194 CGGTGTTAGACCAGGCTCCCTTGAAATCGTACGTCATGACGAAAATATGATCCAGATACT 6253 || ||||||||||||||||| || || |||| | |||||||||||||| ||| | Sbjct 720 TATCATTTGACCAGGCTCCCTTGAAGTCATAACTCATCAAGAAAATATGATCCATATAAT 779 Query 6254 CCTGCACCGCACCGTATTCTACAACGTTTATTTTGTCGTAGCCCCCGCTGATGGCGCTTG 6313 || || ||||| || ||||| | ||||| || | || ||| || || | Sbjct 780 TTTGAGCCTTGCCGTAGTCAACAACTTGGATTTTATCCCATCCAGAGCTAATAGCAGAAG 839 Query 6314 TGAGCAGATACTTGCGACCCGTGCGAGTCTCCAGACCGTCCAGCATGGACCTGAGGTCGC 6373 | | || || ||| | || || | || ||||| | | || Sbjct 840 TTAATTCGTATTTCTTACCATTCTTAGCTGAGAGCTCATCGAGCATCTCACGTAATTCTT 899 Query 6374 CCAAGAGCGCTTGATAGGTGACGCCGTCGACTGTGACGTTTCCTAAGGCAGGATTGGCTC 6433 || | | ||| | || || ||| | | || | |||| || || | Sbjct 900 TCATCAAACTTACATAACAATCACCATCTTCTG---GGCTACCGAGATCAGGGTTAGCAC 956 Query 6434 CCTTGCCTCCGGGAAATTCCCAATCTATGTCCACGCCGTCGAAGAACTTCCAAGTTTCCA 6493 | || || || || || |||||||| || || || || || ||||| ||||| ||| | Sbjct 957 CTTTACCACCAGGGAACTCCCAATCGATATCAACACCATCAAAGAATTTCCATGTTAGAA 1016 Query 6494 GAAATTCTTCGACGCTCTCTACGAACACCTTTCTTTTAATCGTGTCGTTGAGCTGGTAAA 6553 |||| || | || || || || |||| ||| |||| | | | | Sbjct 1017 GAAACTCCTTAACTGACTGCACAAATCGTGTTCTCTTAGATTTGTCAACTAAAAAGAAGA 1076 Query 6554 AGGGATCGCTCAGCGTCCACCCACCGATCGAGGGCAGGATGGTCAGAT----GCGGATTG 6609 | |||||| |||||||||||||| || ||||| || || ||| | |||| | Sbjct 1077 AAGGATCGGCGAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAATTCAGGGCGGGCT- 1135 Query 6610 TGTTTTCGTATGGCCATAAGCTGACCGAAATTACCCTTGTA----CATTTCCGAGTAGGC 6665 |||||| || | ||| | || || || || || ||||| |||| | || | Sbjct 1136 TGTTTTAGT---GACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCACGAAGAC 1192 Query 6666 CTCGACGCCCTTCTGGGGTTTTTGTAGTGCGCCCCATATATCGTGTATGGACACCTTGAA 6725 | || || || |||||||||| ||| ||||| |||||| || || || ||||| Sbjct 1193 ----AATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAA 1248 Query 6726 GTCGTCTCGTCCCTCGCACGATCGCTGCAGAGCTTCGAACGAGCCCGGCACCTGTTTCAG 6785 ||| || || || || || |||||||| |||| ||| ||| | || ||| | Sbjct 1249 GTCCTCACGGCCGCTACAGGACCGCTGCAGTGCTTGGAAACTGCCTTCGATCTCTTTTA- 1307 Query 6786 AGC-GTCGTTGATACCATCCCCTCCGCACATGGGCACGAATCCGTACAGCAGATGTGTGA 6844 ||| ||| || || ||||| || ||||| || || | || || || |||| ||| || | Sbjct 1308 AGCTGTCATTTATGCCATCACCGCCGCAAATTGGAATAAAGCCATAGAGCAAATGAGTAA 1367 Query 6845 GATTGGGAATGGGGATTCTGTCGGCGGGAAACTGTCTGTCGTAAACACCCCACTCCACGA 6904 |||| || || || || | || |||| || | ||| || |||||||| || |||| Sbjct 1368 GATTAGGTATAGGTATACGATCCACGGGGAATTTTCTAGGATAGACACCCCATTCTACGA 1427 Query 6905 AGTAAGCTCC 6914 |||| || || Sbjct 1428 AGTAGGCGCC 1437 >seq6747 Length=1699 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | || |||| ||| | ||| ||| || || || ||||| || Sbjct 635 CATACCTCCTCTTAGACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTC 694 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| || | || ||||||||||| || ||||| || | ||| || ||||||| Sbjct 695 AGAGAGAGTACGACCATCCTCCAGCTGCTTACCAGCAAAAATTAGACGTTGTTGATCTGG 754 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAA-TGTTCCTATGGTGTCGGCGGATT 44285 || | ||| ||||| || |||||| |||| || || | || ||||| | | || Sbjct 755 GGGAATACCCTCCTTGTCTTGTATCTT-GGCTTTAACATTTTCAATAGTGTCTGATGGTT 813 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || | || || || || || ||||| ||||| || ||||| ||||| Sbjct 814 CCACTTCTAATGTGATAGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 865 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | || | ||| |||| |||||| || || ||||| |||||||| || Sbjct 1319 CATTCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTC 1378 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| |||| |||| ||||| || || ||||| | |||||||||||| | Sbjct 1379 GGAAAGAGTGCGGCCGTCTTCCAATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGG 1438 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || || || || || || || | || | || || || | || ||| Sbjct 1439 CGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTC 1498 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| |||| ||||| |||||||| || ||||| || || || || ||||| Sbjct 1499 CACTTCCAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1549 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || |||||||||||||| || | || ||| | || |||| ||| || || |||||| Sbjct 447 TCTTTTTGGATGTTGTAGTCCGACAGAGTGCGGCCATCCTCCAACTGTTTACCAGCAAAG 506 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || | |||||| || |||| || | || ||||| || ||||| ||| | || Sbjct 507 ATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTATCTTGGATCTTTGCCTTAACATTT 566 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | || ||||||| | |||||||||| || || || || || || || ||||| || Sbjct 567 TCGATAGTGTCGGATGGCTCCACCTCCAAAGTGATAGTTTTCCCAGTAAGTGTCTTAACA 626 Query 44327 AAGATTTGCAT 44337 ||||| ||||| Sbjct 627 AAGATCTGCAT 637 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| ||| | | |||| |||||| ||| ||| || || || |||||||| Sbjct 863 CATACCTCCTCGCAGACGGAGTACCAAGTGAAGGGTGGACTCTTTCTGAATATTGTAATC 922 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | | ||| | || |||| ||||| || |||||||| | |||||||||||| | Sbjct 923 TGACAAAGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGG 982 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || || || || || || ||| | || | || ||||| | || ||| Sbjct 983 TGGGATGCCCTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTC 1042 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | |||||| || ||||| || || || || || || |||||||| Sbjct 1043 AACTTCTAACGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAAATTTGCAT 1093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358619241902691