Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4418 147 5e-30 seq6747 145 2e-29 seq115306 107 5e-18 >seq4418 Length=3433 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||| || || || ||||| ||||| | || || ||| || || Sbjct 865 CAAATTTTCGTGAAAACGCTGACTGGCAAAACTATCACATTGGAAGTAGAAGCTTCTGAT 924 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||| ||||||||||||||||| || || || ||||| || Sbjct 925 ACAATAGAAAATGTCAAGGCAAAAATTCAGGACAAAGAAGGCATTCCCCCAGACCAACAG 984 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||| || || || ||||||||||| || | | ||||| || | Sbjct 985 AGATTGATTTTTGCCGGTAAGCAACTTGAAGATGGAAGAACATTATCTGATTACAATATT 1044 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || |||||||| || || || |||||| | ||||||||| Sbjct 1045 CAGAAAGAATCTACCCTTCACCTTGTTCTCAGACTCAGA 1083 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || || || ||||| || || | || |||||| || ||| Sbjct 181 CAAATTTTTGTTAAAACACTGACTGGCAAAACTATTACTTTAGAAGTGGAAGCATCTGAC 240 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||||||| ||||| ||||| || ||||| ||||| ||| Sbjct 241 ACAATCGAAAATGTTAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGACCAACAA 300 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||||||||| || || ||||||||| | || || | || ||||| | Sbjct 301 AGATTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGCACACTGTCAGACTATAATATT 360 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || |||| |||| Sbjct 361 CAGAAGGAATCGACTTTGCA-CTTG 384 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || || || || || || ||||| | || |||||| || || Sbjct 409 CAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACATTGGAAGTGGAAGCTTCTGAT 468 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||| ||||| ||||| ||||| || ||||| ||||| || Sbjct 469 ACAATAGAAAATGTTAAGGCAAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAACAG 528 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || |||||||| |||||| | ||||||||| | ||||| | |||||||| | Sbjct 529 AGACTGATTTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTATCTGATTATAATATT 588 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 ||||||||||| || |||| | ||| || | || || Sbjct 589 CAAAAAGAATCTACTTTGCACTTAGTTCTGCGTCTAAG 626 >seq6747 Length=1699 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| ||||||||||| |||||| | ||||| ||| || ||| Sbjct 1318 CAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACCTTAGAGGTAGAACCATCGGAC 1259 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || |||||| || ||||||||||| || || || ||||| ||| Sbjct 1258 ACTATTGAAAACGTGAAGGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGACCAACAA 1199 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || || || || |||||||| || |||||||| | || || | ||||||||| | Sbjct 1198 AGGCTCATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACACTATCTGATTATAACATT 1139 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||| ||||| || || ||| | || ||| Sbjct 1138 CAAAAGGAATCTACTCTACATTTAGTATTG 1109 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||| || || ||||| || || || || || |||||| ||| || Sbjct 1546 CAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACTCTGGAAGTGGAACCCTCTGAT 1487 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || |||||||| || ||||| || || ||||| Sbjct 1486 ACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCGCCTGATCAGCAG 1427 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| ||||| || | ||||| || | |||||| |||| || ||| | Sbjct 1426 CGTCTTATCTTCGCTGGAAAGCAATTGGAAGACGGCCGCACTCTTTCCGACTACAACATT 1367 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||||||||| || || || |||| Sbjct 1366 CAAAAAGAATCTACTCTTCA-CTTG 1343 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || ||||| ||||| | |||||||| || ||| Sbjct 634 CAGATCTTTGTTAAGACACTTACTGGGAAAACTATCACTTTGGAGGTGGAGCCATCCGAC 575 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || |||||| || || || || || || || || ||||| || Sbjct 574 ACTATCGAAAATGTTAAGGCAAAGATCCAAGATAAGGAGGGCATTCCCCCAGACCAACAG 515 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || |||||| | || ||||| | ||||| | || || ||| || Sbjct 514 CGTCTCATCTTTGCTGGTAAACAGTTGGAGGATGGCCGCACTCTGTCGGACTACAACATC 455 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||||||||| || ||||| Sbjct 454 CAAAAAGAATCTACTTTGCAT 434 Score = 91.5 bits (100), Expect = 4e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 || || || ||||||||||| || ||||| || || ||||| ||||| ||||| || || Sbjct 1693 AAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAACAACGTCTTATTTTCGCGGGCAAG 1634 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || | |||||||| | || ||| | || || ||| ||||||||||||| || ||||| Sbjct 1633 CAATTAGAAGATGGTCGTACACTTTCTGACTACAACATCCAAAAAGAATCTACTTTGCAT 1574 >seq115306 Length=588 Score = 107 bits (118), Expect = 5e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || || || |||||||| ||||| || ||| ||| Sbjct 60 CAGATTTTCGTGAAAACCCTAACGGGTAAGACCATCACCCTTGAGGTCGAGCCCTCGGAC 119 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || |||||||| ||||| ||||| || |||||||| ||||| ||||| |||||||| Sbjct 120 ACTATCGAGAATGTCAAGGCTAAGATCCAAGACAAAGAGGGAATTCCTCCAGACCAGCA 178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1198911218400462