Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq24004 538 4e-148 seq32346 84.2 3e-11 >seq24004 Length=11461 Score = 538 bits (596), Expect = 4e-148 Identities = 1110/1625 (68%), Gaps = 47/1625 (3%) Strand=Plus/Minus Query 52788 TTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGAT 52847 |||||||| | ||||| | || || ||||| | | | ||| ||||| || |||| | Sbjct 10016 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 9957 Query 52848 AGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGG 52907 |||||||||| ||||||| || | |||| ||| ||||| || || ||||| Sbjct 9956 AGTACATTCCTGTTTTTAATCCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 9897 Query 52908 AATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCC 52967 ||| | || | || | ||| || || | |||||||||||| || || || ||||| | Sbjct 9896 CATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTCCTC 9837 Query 52968 TGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACT 53026 | || || ||||| | |||| || || ||| ||| ||||| | ||||| || || | Sbjct 9836 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 9777 Query 53027 CGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATAGATCCACCATCTACCATAATC 53083 | |||| | |||| |||| ||| | |||| | ||||||||| | ||||| Sbjct 9776 CTCTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATA 9718 Query 53084 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGA 53143 ||| || || || |||| ||| || | | || ||| | | || ||||| | Sbjct 9717 AGATTTTTCATATCGTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGG 9658 Query 53144 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 53203 || ||||| ||||||||||||| || ||||| | ||||||||| ||| | ||| Sbjct 9657 TTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGT 9598 Query 53204 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 53263 || | ||| ||| | || || | |||||| ||||| || |||||||||||||| || | | Sbjct 9597 TCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTATC 9538 Query 53264 AATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCC 53321 |||| | ||| | | ||| ||||| || || || ||||| || |||| | || Sbjct 9537 AATAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCC 9480 Query 53322 AAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTAC 53380 |||| || | || || || ||||| | || || | || Sbjct 9479 AAAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGCTGGAC 9420 Query 53381 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 53440 ||| |||||| ||||| ||||| || ||||||| ||||||||| || |||||| Sbjct 9419 TC-CCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAAT 9361 Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 53500 ||||| |||||||| ||||| || || | | ||| ||| | ||||| | || || Sbjct 9360 GCACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACTTTCG 9301 Query 53501 AATGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 53559 | | ||| | | | | | |||||| ||||| | || |||||||||||||| ||||| Sbjct 9300 TAAG-ATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGG 9242 Query 53560 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 53619 |||||||||| |||| || ||| ||||| || | ||||||| |||||| ||| |||| Sbjct 9241 TCTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACATCAATAAC 9182 Query 53620 TTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA 53676 ||| || | ||| | ||||| ||||| | || || | ||| ||||| ||| Sbjct 9181 TTTGTTTAAATTTTGAGTTACAAT--CTTTGTG-ATTTCTTTTAATTTTTTAAAATTAAA 9125 Query 53677 T-TGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCT 53735 | ||| || | ||||||||||| | ||| || || || || || || || || || | Sbjct 9124 TCTGTT-ATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTT 9066 Query 53736 CATTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTC 53792 ||| | || | | ||||| | | ||||||||||||||| ||||| || || || | Sbjct 9065 CAT---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGC 9009 Query 53793 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTAC 53852 | | ||||| ||||||||||||| ||||||| ||||||||||| | ||| |||| |||| Sbjct 9008 CAAGATTTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTAC 8949 Query 53853 CAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATT 53912 |||| || | |||| ||||||||| | ||||| | | |||| | | | | || Sbjct 8948 CAGTCTCCACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGA--CTTGTTT 8891 Query 53913 TGT--ATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAAC 53970 | | ||| |||||| ||| ||| | ||| | | ||||| || ||| || || | Sbjct 8890 TATAAATCGTTTTTCTTCTTCATATTTGGCATATAGTTCGTCAAATTCCTCT-CCAAAGC 8832 Query 53971 A-TTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT-- 54027 | | | | |||||||| |||| |||||||| | ||| || |||||||| Sbjct 8831 AGTCAGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAAACT---TCATCCTTTT 8775 Query 54028 -CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTAT 54086 |||| ||||||||| ||||| || ||||| | ||| ||| || ||||| | ||| Sbjct 8774 CTACTCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCA 8715 Query 54087 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 54146 ||| || || ||||| ||||| || | ||| | ||| | | ||||| | |||||| | Sbjct 8714 TTTCTTCCTTACCTGTGTTCTTCTTTAAATCCAAGAATTCAAATATATCCGCATGCCAAG 8655 Query 54147 GTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 54206 | || || || || | | | || || ||||||||||| || ||||||| ||||| | Sbjct 8654 GCTCTAAATAAATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATCTGG 8595 Query 54207 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGG 54266 | || || ||||| |||||||||||||| | | |||||| || | ||||| || || | Sbjct 8594 CAGTATTGTTATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAG 8535 Query 54267 AGATATAGCTTCCACTG-GCACGAAT---ATTACTAATTGATAGACCTATCCCCCCTGCC 54322 || || || ||| || | || || || || || |||||| || || || Sbjct 8534 CTATGTAAGAACC-CTGAGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCAGCA 8479 Query 54323 ATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCC 54382 |||||| |||||||| ||| ||||||| |||||| |||| || || || ||||| || Sbjct 8478 GATTTAGAAATTAATGCACATTGTTTTAAAGTATCAAAGATACCTTCAATGCTATCGTCT 8419 Query 54383 ATCAT 54387 |||| Sbjct 8418 TTCAT 8414 Score = 96.9 bits (106), Expect = 4e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 54568 CTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 54627 ||| |||||||| |||| ||| || ||| ||||||||||||| ||||||||||||||||| Sbjct 7901 CTTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTA 7842 Query 54628 TGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTT 54678 | ||| |||| || |||| ||| | |||| | ||| ||||| | ||| Sbjct 7841 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 7791 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 54779 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 54838 || || || ||||| |||| ||| |||| |||||||| || || | |||||||||||| Sbjct 7135 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCG 7076 Query 54839 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTT 54898 ||||| | ||| || ||| ||||| ||||| || | ||| | || | || | ||| Sbjct 7075 GGATGATCTGTGGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 7016 Query 54899 GTTACTCCATTATATATTCC 54918 ||||| ||| |||||| || Sbjct 7015 GTTACACCAGAATATATGCC 6996 >seq32346 Length=5591 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680 || |||| || |||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 4158 TTGGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 4217 Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 24729 || || || ||||||| ||||| || |||||||| | | ||||||| Sbjct 4218 CATATATCTGGATATTGGATTGGGAATATAACAAAACGTCTAGGATTTT 4266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591958142946720