Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq44559 100 2e-16 seq31223 100 2e-16 seq53127 89.7 3e-13 seq207359 84.2 1e-11 >seq44559 Length=2984 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 34187 TGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGC 34246 || |||||| |||||| || ||||| ||||| || || ||| | || || ||||| Sbjct 1322 TGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGATAGAGTGCGGCCATCCTCTAACTGT 1263 Query 34247 TTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTT 34306 || || || || ||||| ||||| ||||| ||| | || ||||||||| ||||| Sbjct 1262 TTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTA 1203 Query 34307 TGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTG 34366 ||| | || | || | |||| | || || |||| |||||||| || || || Sbjct 1202 GCCTTAACATTTTCGATAGTGTCGGATGGCTCCACCTCCAAAGTGATGGTCTTCCCAGTA 1143 Query 34367 AGAGTTTTCACAAAGATCTGCAT 34389 ||||| || |||||||||||||| Sbjct 1142 AGAGTCTTAACAAAGATCTGCAT 1120 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34181 ACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCC 34240 |||| ||| ||||| |||||||| || |||||||| || || |||| | || ||| Sbjct 1100 ACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAGAGAGTACGGCCATCCTCC 1041 Query 34241 AACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCT 34300 | ||||||||| ||||||||||| || || || || ||| | | ||| ||||| Sbjct 1040 AGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGAATACCCTCTTTGTCTTGG 981 Query 34301 ATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTT 34359 ||| || ||||| | || | || | || | | ||| || || | ||||| ||||| Sbjct 980 ATC-TTGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACTTCTAATGTGATAGTTTT 922 Query 34360 GCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || || |||||||||||||| Sbjct 921 CCCTGTCAGTGTCTTTACAAAGATCTGCAT 892 >seq31223 Length=3647 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || |||| ||| | |||| |||||| || || || ||||| || Sbjct 502 TCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGA 561 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || |||| ||||| ||||| || |||||||| | || || || || || Sbjct 562 AAGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGG 621 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | || |||||||| || ||| ||||| | || | || | ||||| | ||| | Sbjct 622 AATGCCTTCCTTGTCTTGAAT-TTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAA 680 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| || |||||||| || || || |||||||||||||||||||| Sbjct 681 CTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 729 >seq53127 Length=7988 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 34186 GTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTG 34245 ||| |||||| ||| ||||| || || ||||| ||||| || | || ||||| || Sbjct 5801 GTGCAAAGTAGATTCCTTCTGGATATTATAGTCTGACAGTGTGCGCCCATCTTCCAATTG 5742 Query 34246 CTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTT 34305 ||| || |||||||| || | || || || || | || |||||||| ||||| Sbjct 5741 CTTTCCGGCGAAAATTAGTCTTTGTTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTT 5682 Query 34306 TTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGT 34365 | ||||| | | || | ||| | | ||| || |||| ||||||||||| || || Sbjct 5681 TGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATGGTTTTCCCAGT 5622 Query 34366 GAGAGTTTTCACAAAGATCTGCAT 34389 | |||||| || ||||| ||||| Sbjct 5621 TAAAGTTTTTACGAAGATTTGCAT 5598 >seq207359 Length=487 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || | ||| |||||| |||||| || ||||||||||| ||||| ||| | || Sbjct 426 AGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGACAGTGTACGACCATCT 367 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || || |||||||| || ||||| || || || || || || | || || ||||| Sbjct 366 TCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTCT 307 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || ||| ||||| | || | || | || | | ||| || || | || || || Sbjct 306 TGGAT-TTTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCAACTTCTAAAGTAATTGT 248 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| || ||||| ||||| |||||||| ||||| Sbjct 247 TTTTCCAGTGAGTGTTTTAACAAAGATTTGCAT 215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322136409131840