Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq45806 196 4e-45 seq21383 104 2e-17 seq53127 95.1 1e-14 >seq45806 Length=6479 Score = 196 bits (216), Expect = 4e-45 Identities = 180/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 13216 ACTGGCCCCGTTGTATGAAGCAGAGACCCGAGCAGATGGCGGATGCCGGTTTCTTCTACA 13275 ||||||| || |||||||||||| || ||| | | || || || || |||||||||| Sbjct 5136 ACTGGCCTCGCAGTATGAAGCAGAAGCCTGAGGAACTCGCCGAAGCGGGATTCTTCTACA 5195 Query 13276 CTGGCTACGGTGACAATACAAAGTGCTTCTATTGTGACGGCGGATTGAAAGATTGGGAGC 13335 | ||| | |||||||| || ||||||||||| |||||||||||| | || || |||||| Sbjct 5196 CCGGCCAGGGTGACAAAACTAAGTGCTTCTACTGTGACGGCGGACTCAAGGACTGGGAGA 5255 Query 13336 CGGAAGATGTACCTTGGGAACAGCATGTAAGATGGTTCGACCGTTGCGCCTACGTTCAGC 13395 || || || || ||||| ||||| | | ||||||||||| ||||||||||| |||| Sbjct 5256 ACGACGACGTGCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGGTGCGCCTACGTGCAGC 5315 Query 13396 TAGTCAAGGGTAGAGACTACGTACAGAAAGTCATCACGGAAGCCTGCG 13443 | ||||| || |||| ||||| ||||| || ||||||||||| |||| Sbjct 5316 TGGTCAAAGGCCGAGAGTACGTCCAGAAGGTGATCACGGAAGCGTGCG 5363 >seq21383 Length=8822 Score = 104 bits (114), Expect = 2e-17 Identities = 326/500 (65%), Gaps = 10/500 (2%) Strand=Plus/Minus Query 6850 GTTCGCTCCCTTTCCTCCCGGAAACTCCCAGTCAATATCCACTCCGTCGAAAAACTTCCA 6909 ||| || || || || || || |||||||| || ||||| || || ||||| || ||||| Sbjct 1579 GTTAGCACCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCA 1520 Query 6910 CGTCTCCAGAAACTCGCGCACGCTCTGCACAAACACCCGACGCTTGGCGGAGTCGTGCAT 6969 || |||||||| || ||||||||| | ||| | | | || || Sbjct 1519 TGTTAGAAGAAACTCCTTTACTGACTGCACAAATCGTGTTCTCTTAG---ATTTGT-CAA 1464 Query 6970 CTT----GTAGAAGGGGTCGCTAAGCGTCCACCCGCCTATGGAGGGTAGTATAGTCAGAT 7025 || | |||| || ||| |||||||||||| || || || || || || ||| | Sbjct 1463 CTAAAAAGAAGAAAGGATCGGCAAGCGTCCACCCACCAATAGATGGAAGAATCTTCAATT 1404 Query 7026 TGGGGTTGTGGTGTTTGATGGCCATCAGCTGGCCAAAATTACCCTTATACGGCTCGTCGT 7085 ||| | ||||| | | ||| | |||||||| || || || || ||||||| Sbjct 1403 CAGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCC 1344 Query 7086 ACGCCTCCACACCCTTTTGTGGTTTCTGTACGGCGCCCCACAAATCGTGTATACTCACTT 7145 | | || || ||||||||||| |||| || |||| |||||| || |||| Sbjct 1343 ATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTT 1284 Query 7146 TGAAATCGTCTCGGCCCGCGCACGATCTTTGCAACGCTT-CAAACGACCCCGGCACCTGT 7204 |||| || || ||||| || |||| || | |||| |||| || | | || | Sbjct 1283 TGAAGTCCTCACGGCCGCTACAGGATCGCTGTAGTGCTTGGAAACTGCCTTCG-ATCTCT 1225 Query 7205 TTCAAGGCGTCGTTGAGTCCGTCTCCCCCGCAAATGGGCACAAATCCGTACAGCAAATGG 7264 || || || |||| ||||| || |||||||| || | ||| ||||| |||||||| Sbjct 1224 TTTAAACTATCATTGATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTAGAGCAAATGA 1165 Query 7265 CTGAGATTGGGCACGGGCACCTTGTCTGCGGGAAACTGCCGTCCGTACACACCCCACTCC 7324 | ||||| || | || | || |||| || | || || |||||||| || Sbjct 1164 GTAAGATTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGATAGACACCCCATTCT 1105 Query 7325 ACAAAGTACGCCGCCACCAC 7344 || ||||| || |||| || Sbjct 1104 ACGAAGTAGGCACCCACAAC 1085 >seq53127 Length=7988 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||||||| | | ||||| ||||| || ||||||||||| |||||||| Sbjct 6508 CCACCTCTCAACCGCAGTACCAGGTGCAAAGTTGATTCCTTCTGAATATTGTAGTCAGAT 6449 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || || || || ||||| || || || | | || || || || || Sbjct 6448 AGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGA 6389 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||| || ||| ||||||| ||||| | | | || | | ||||| Sbjct 6388 ATACCCTCTTTATCCTGAATTTTTGCTTTAACATTTTCAATTGTATCAGAAGCTTCCACT 6329 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || |||||||| ||||| ||||| ||||| |||||||| Sbjct 6328 TCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTAACAAAAATTTGCAT 6282 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | | || || || |||| || ||||||||| || || ||||| | Sbjct 7192 CCACCTCTTAGACGCAAAACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCTGAC 7133 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | | ||| | || |||||||| ||||||||||| |||| | |||||||| ||||| Sbjct 7132 AATGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGGTCTGGAGGA 7073 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || |||||||| ||| ||| |||||| | | | || | | ||||| Sbjct 7072 ATGCCTTCCTTGTCTTGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACT 7013 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || || || || |||| || |||||||| |||||||| Sbjct 7012 TCCAAAGTGATAGTTTTCCCAGTCAATGTTTTCACAAAAATTTGCAT 6966 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45108 CGCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGT 45167 |||||||||| | ||| | || | ||| || || || ||||| || || ||||| Sbjct 7650 CGCCACCTCTAAGTCTGAGAACAAGGTGAAGGGTAGATTCTTTCTGGATATTATAGTCTG 7591 Query 45168 TCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 || | ||| | || |||||||| ||||||||||| |||| | ||||| || |||| Sbjct 7590 ACAATGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAG 7531 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | || ||||| || ||| ||| |||||| | | | || | | |||| Sbjct 7530 GAATGCCTTCCTTATCTTGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCA 7471 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||| || || || || || ||||| ||||| ||||| |||||||| Sbjct 7470 CCTCCAAAGTGATAGTTTTCCCAGTCAGCGTCTTTACAAAAATTTGCAT 7422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393931093579894