Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq31223 102 6e-17 seq53127 89.7 4e-13 seq88586 87.8 1e-12 >seq31223 Length=3647 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | || || || |||| |||||| | || || ||||| ||||| |||||| Sbjct 83 TCTTTTTGGATGTTATAGTCAGACAGTGTACGACCATCTTCTAATTGCTTGCCCGCAAAA 142 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || | || |||||||| | || | |||||||| || ||| |||| || | Sbjct 143 ATAAGACGTTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTCACATTT 202 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| |||||| ||| || || |||| || || |||||||| || || ||||| ||| Sbjct 203 TCAATTGTGTCAGAAGCTTCAACTTCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAACA 262 Query 43099 AAAATTTGCAT 43109 ||||||||||| Sbjct 263 AAAATTTGCAT 273 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || ||||| || | ||| || ||||| | ||| || || || Sbjct 503 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAA 562 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| |||||||| || || || |||||||| || |||||||| | || Sbjct 563 AGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 622 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || || |||| || | ||| || ||| || || || Sbjct 623 ATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACT 682 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || ||||| || || || ||||||||||| || |||||||| Sbjct 683 TCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 732 >seq53127 Length=7988 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 || || ||||| | ||| |||||| || | ||| || || |||||||| ||| | || Sbjct 7177 AAAACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCTGACAATGTGCGTCCATCT 7118 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 |||| ||| || ||||| ||||||| || ||||| || | || | ||||| || || Sbjct 7117 TCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGGTCTGGAGGAATGCCTTCCTTGTCT 7058 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 ||| | || || | | | ||| || ||| || || || | || |||||| Sbjct 7057 TGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGTGATAGTT 6998 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || || | |||||||||||||||||||| Sbjct 6997 TTCCCAGTCAATGTTTTCACAAAAATTTGCAT 6966 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 || || ||||| | ||| |||||| || | ||| || || |||||||| ||| | || Sbjct 7405 AAAACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCCGACAATGTGCGTCCATCT 7346 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 |||| ||| || || || ||||||| || |||||||| | || | ||||| || || Sbjct 7345 TCCAGTTGCTTTCCAGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTATCT 7286 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 ||| | || || | | | ||| || ||| || || || | || |||||| Sbjct 7285 TGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGTGATAGTT 7226 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || || || || || ||||||||||||||| Sbjct 7225 TTCCCAGTCAGTGTCTTTACAAAAATTTGCATT 7193 >seq88586 Length=4530 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 42875 AATCGTCGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGT 42934 ||| || ||||| || |||| | ||| | ||| | ||| |||||||| | |||| Sbjct 2171 AATAGTTACCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGT 2230 Query 42935 AATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGAT 42994 | || |||||||||||| | || || | |||||| || ||||| ||||| || || || | Sbjct 2231 AGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGT 2290 Query 42995 CGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAG 43054 | | || | |||||| || || ||| |||| || | | | || || | Sbjct 2291 CTGGTGGAATACCTTCCTTATCTTGGATTTTAGCTTTAACATTTTCTATAGTATCAGAGG 2350 Query 43055 CCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| || || | || || ||||| || || || || || || |||||||||||| Sbjct 2351 CCTCCACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATT 2406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380265183909612