Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25]
237,614 sequences; 309,419,125 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq21383 192 5e-44
seq53127 102 7e-17
seq45806 102 7e-17
seq31223 91.5 1e-13
>seq21383
Length=8822
Score = 192 bits (212), Expect = 5e-44
Identities = 610/931 (66%), Gaps = 35/931 (4%)
Strand=Plus/Minus
Query 100309 TTCGTTTTCAATTTGGCGATAATCGACAACGCCGTCTTCCCAAGTGCCGGTCACGGGCCC 100368
||| || |||| | | ||| || || || ||||||| |||||| || | || || ||
Sbjct 2065 TTCATTCGCAATCTCCCTATAGTCAACCACTCCGTCTTGCCAAGTTCCTTTGACAGGTCC 2006
Query 100369 GGCAGCTGTGCCTGTGAA---ATAGTTGTCACCGTCATAGCCCGCCACGCCTGTCCAACC 100425
| ||| |||||||||| | |||||| || || | ||||| ||||||||
Sbjct 2005 AGTAGCGTTGCCTGTGAAGGGAATGTTGTCTTTGTAAT---CATGAACGCCAGTCCAACC 1949
Query 100426 GCGGCCGTACATGGCAACGCCCACAATAATTTTGCGCGGGTCCACGCCCTGGTTCGTGAG 100485
|| || ||||| ||||| || || | ||| || || | ||| ||||| || ||
Sbjct 1948 ACGACCATACATAGCAACACCTACTACAATCTTCTTAGGATTCACTCCCTG---CGCCAG 1892
Query 100486 CAA---TTTCACGGCGTGATCCGTGTTGTACAGCTCGTTCGGGTTCCAACTCGGCGCGTA 100542
||| ||| || | || | |||| || || || ||||| ||||||||
Sbjct 1891 CAAGTATTTTACTCCAAAGTCAGATGTGTAAGTTTCCTTGGGATTCCACGCAGGCGCGTA 1832
Query 100543 GAGAGTGGTTTGGTAGCCCAA----ATCGGTGTTTGACCAGGCGCCTTTAAAATCGTAGC 100598
| | ||||| | | |||| ||| ||||||||||| || || || ||||| |
Sbjct 1831 CAATGGCGTTTGAT-GTCCAAGAGTATCA---TTTGACCAGGCTCCCTTGAAGTCGTAAC 1776
Query 100599 TCAT-AAGAAATATTTTATCGAGAAGCTTTTGCGCAACGTCGTACTGTACCACAGCAATT 100657
|||| |||||| || | ||| | | ||||| || | |||| | || || |||
Sbjct 1775 TCATCAAGAAA-ATATGATCCATATAATTTTGAGCTTTGCCGTAGTCAACAACTTGGATT 1717
Query 100658 TTGTCATAGCCGGAACTGATTGCGCTTGTCAACTCGTACGTTTTGCCCGTTTGCAGTTGT 100717
|| || | || | ||| || || || || ||||| | || || | | || ||
Sbjct 1716 TTATCCCATCCAGCACTAATAGCAGAAGTTAATTCGTATTTCTTACCATTCTT-AGCTGA 1658
Query 100718 -AGCTGGTCCAGCATCGCGCGCAATTCCTTCAGTAAAATGTTGTACGTGTCGGCGTCGCG 100776
|||| ||||||||| | || ||||| |||| ||| | || || | ||
Sbjct 1657 GAGCTCATCCAGCATCTCACGTAATTCTTTCATCAAACTTACATAACAATCACCATCT-- 1600
Query 100777 CTCCCCGTTGCCAAGAGTC-GGGTTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCAATGT 100835
|| | | || || ||| ||||| || |||||||| || || |||||||| || || |
Sbjct 1599 -TCTGGGCTACCGAG-GTCAGGGTTAGCACCTTTGCCACCAGGGAACTCCCAATCGATAT 1542
Query 100836 CCACGCCGTCAAAAAACTTCCACACCTGCAAAAATTCCTTGACCGAGTCCACAAACACGC 100895
| || || || || || ||||| | | ||| ||||| || || | |||||| |
Sbjct 1541 CAACACCATCGAAGAATTTCCATGTTAGAAGAAACTCCTTTACTGACTGCACAAAT---C 1485
Query 100896 GCCGTTTTTCCGCATCGTGCATGAAATAGAAC---GGGTCGGACAACGTCCAGCCGCCGA 100952
| | | | | | || | ||| |||| || |||| | |||||| || || |
Sbjct 1484 GTGTTCTCTTAGATTTGTCAACTAAAAAGAAGAAAGGATCGGCAAGCGTCCACCCACCAA 1425
Query 100953 TGGACGGCAGAATTTTGAGGTGCGGATTGGCCAGCTTGGCCGCCATTAGCTGACCGAAAT 101012
| || || ||||| || | | || ||| | || | ||||| || || || |
Sbjct 1424 TAGATGGAAGAATCTTCAATTCAGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGT 1365
Query 101013 TGCCCTTGTACGGCTCGTTCCATGCGGACACGCCCTTTTGCGGTTTTTGTATTGCGGCCC 101072
|||| ||||| ||||||||||||| |||| || ||||| |||||||||| ||| ||||
Sbjct 1364 TGCCTTTGTAGGGCTCGTTCCATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCC 1305
Query 101073 AGGGATCGTGAATGGCGACTTTGAAATCTGAACGACCCTTGCAGGAGCGCTGCAGCGCTT 101132
| |||||||| || | ||||||||| || ||| || | ||||| ||||| || ||||
Sbjct 1304 ATGGATCGTGGATTGAGACTTTGAAGTCCTCACGGCCGCTACAGGATCGCTGTAGTGCTT 1245
Query 101133 CAAAACTGCCGGGAATGGTTTTGAGGGCGTCGTTGAGGCCGTCGCCGCCGCAAATGGGTA 101192
|||||||| || ||| | || |||| |||||| ||||||||||| || |
Sbjct 1244 GGAAACTGCCTTCGATCTCTTTTAAACTATCATTGATGCCGTCACCGCCGCAAATTGGAA 1185
Query 101193 TGAACCCGTACAACAGATGCGAGAGATTGGG 101223
| || ||||| | || ||| | ||||| ||
Sbjct 1184 TAAAGCCGTAGAGCAAATGAGTAAGATTAGG 1154
>seq53127
Length=7988
Score = 102 bits (112), Expect = 7e-17
Identities = 149/211 (71%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| |||||| ||||| |||||||||||||| ||||| | || ||| | || ||
Sbjct 6263 CACCAAGTGCAAAGTAGATTCCTTTTGAATATTATAATCTGACAGTGTACGTCCATCTTC 6204
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
||||||||| || ||| ||||||| ||||| || || || | ||| ||||||||
Sbjct 6203 CAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTG 6144
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|||||| || || | | | ||||| || ||| ||| | || || |||||
Sbjct 6143 AATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAATGTGATAGTTTT 6084
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|| || | || || ||||| |||||||||
Sbjct 6083 GCCAGTCAGTGTCTTTACAAATATTTGCATT 6053
Score = 100 bits (110), Expect = 2e-16
Identities = 163/234 (70%), Gaps = 8/234 (3%)
Strand=Plus/Minus
Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872
|||| |||| ||||| | |||| |||||| || || ||||| ||||||||||| || |
Sbjct 6510 TTCCACCTCTCAACCGCAGTACCAGGTGCAAAGTTGATTCCTTCTGAATATTGTAGTCAG 6451
Query 18873 CCATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928
| ||| |||||| || ||||| || || ||| |||||||||| ||||||||
Sbjct 6450 ATAGTGT----GCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCT 6395
Query 18929 ACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC 18988
||| | |||||||| || |||||| ||| || | | | ||||| ||
Sbjct 6394 GGGGGAATACCCTCTTTATCCTGAATTTTTGCTTTAACATTTTCAATTGTATCAGAAGCT 6335
Query 18989 TCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
||| ||| | || || || || || || | || || |||||||||||||||
Sbjct 6334 TCCACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTAACAAAAATTTGCATT 6281
Score = 100 bits (110), Expect = 2e-16
Identities = 163/234 (70%), Gaps = 8/234 (3%)
Strand=Plus/Minus
Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872
|||| |||| || || | |||| ||||| ||||| ||||| ||||||||||| || |
Sbjct 6738 TTCCACCTCTCAGCCGCAGTACCAGATGCAAAGTAGATTCCTTCTGAATATTGTAGTCAG 6679
Query 18873 CCATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928
| ||| |||||| || ||||| || || ||| |||||||||| ||||||||
Sbjct 6678 ATAGTGT----GCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCT 6623
Query 18929 ACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC 18988
||| | ||||||||| || ||||||| || || | | | ||||| ||
Sbjct 6622 GGGGGAATGCCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCT 6563
Query 18989 TCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
||| ||| | || || ||||| || || | || || ||||| |||||||||
Sbjct 6562 TCCACTTCCAATGTGATAGTTTTGCCAGTCAGTGTCTTTACAAATATTTGCATT 6509
Score = 96.9 bits (106), Expect = 3e-15
Identities = 162/234 (69%), Gaps = 8/234 (3%)
Strand=Plus/Minus
Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872
|||| |||| || || || || | |||||| ||||| || || ||||| |||||||| |
Sbjct 6054 TTCCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAATCAG 5995
Query 18873 CCATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928
| ||| |||||| || ||||| || || ||| |||||||||| ||||||||
Sbjct 5994 ATAGTGT----GCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCT 5939
Query 18929 ACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC 18988
||| | |||||||| || |||||| ||| || | | | ||||| ||||
Sbjct 5938 GGGGGAATTCCCTCTTTATCCTGAATTTTTGCTTTAACATTTTCAATTGTATCAGAAGGC 5879
Query 18989 TCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|| ||| | || || || || || || | || || || ||||||||||||
Sbjct 5878 TCAACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACGAAAATTTGCATT 5825
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889
|| || | |||||| ||||| ||||| || ||||| || || | || ||| | ||
Sbjct 5809 AAAACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCTGACAGTGTGCGCCCATCT 5750
Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949
|||| || || || || |||| ||||| || ||||| || | ||| || |||||
Sbjct 5749 TCCAATTGCTTTCCGGCGAAAATTAGTCTTTGTTGATCTGGAGGGATGCCTTCCTTGTCT 5690
Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009
||| || ||||| | ||| ||||| || ||| ||| | || ||||||
Sbjct 5689 TGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATGGTT 5630
Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAATCTCTTATAAA 19058
|| || ||||||||||| || || |||||||| | ||||| | | |||
Sbjct 5629 TTCCCAGTTAAAGTTTTTACGAAGATTTGCATGATGAATCTGTAAGAAA 5581
>seq45806
Length=6479
Score = 102 bits (112), Expect = 7e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 25230 CGCAAAAACGGGCATTGCGGCGCCCATTTTTGATGATCGCGAGCCGGGTCGTCGCCCGCC 25289
||||| || ||||| || |||||||| || || || || || |||||||||||
Sbjct 4965 CGCAAGAAAGGGCACTGAGGCGCCCAGCGCTGGTGGTCCTTGGCGGGATCGTCGCCCGCA 4906
Query 25290 TCCCAGCGCATAATCTCCACTTTGCAAAACGCGCAGCGCACTTCGTCGCCGCGTCCCAAG 25349
|||| |||||| || ||||| |||||||||||||| ||||| |||||||| ||||
Sbjct 4905 ACCCATTTCATAATTTCTACTTTACAAAACGCGCAGCGTACTTCATCGCCGCGGCCCAGA 4846
Query 25350 TAGTAGAACCCATT 25363
|| ||||| |||||
Sbjct 4845 TAATAGAAGCCATT 4832
>seq31223
Length=3647
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| || |||||||||||||| ||||| | | ||| | | || ||||| ||||| ||
Sbjct 305 GTCGATTCCTTTTGAATATTATAATCAGATAATGTACGGCCATCTTCCAGTTGTTTTCCA 364
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| ||||||| ||||| ||||| ||| | ||||||||||| || || ||
Sbjct 365 GCAAAAATAAGCCTCTGTTGATCTGGGGGAATACCCTCTTTGTCTTGGATCTTTGCCTTC 424
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | ||| ||| ||| ||||| || | || |||||||| ||||| | |||
Sbjct 425 ACATTTTCGATAGTGTCGGACGGCTCTACCTCTAAAGTGATGGTTTTTCCTGTAAGAGTC 484
Query 19025 TTGACAAAAATTTGCATT 19042
|| ||||| || ||||||
Sbjct 485 TTAACAAAGATCTGCATT 502
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 413372230077916
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