Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq21383 192 5e-44 seq53127 102 7e-17 seq45806 102 7e-17 seq31223 91.5 1e-13 >seq21383 Length=8822 Score = 192 bits (212), Expect = 5e-44 Identities = 610/931 (66%), Gaps = 35/931 (4%) Strand=Plus/Minus Query 100309 TTCGTTTTCAATTTGGCGATAATCGACAACGCCGTCTTCCCAAGTGCCGGTCACGGGCCC 100368 ||| || |||| | | ||| || || || ||||||| |||||| || | || || || Sbjct 2065 TTCATTCGCAATCTCCCTATAGTCAACCACTCCGTCTTGCCAAGTTCCTTTGACAGGTCC 2006 Query 100369 GGCAGCTGTGCCTGTGAA---ATAGTTGTCACCGTCATAGCCCGCCACGCCTGTCCAACC 100425 | ||| |||||||||| | |||||| || || | ||||| |||||||| Sbjct 2005 AGTAGCGTTGCCTGTGAAGGGAATGTTGTCTTTGTAAT---CATGAACGCCAGTCCAACC 1949 Query 100426 GCGGCCGTACATGGCAACGCCCACAATAATTTTGCGCGGGTCCACGCCCTGGTTCGTGAG 100485 || || ||||| ||||| || || | ||| || || | ||| ||||| || || Sbjct 1948 ACGACCATACATAGCAACACCTACTACAATCTTCTTAGGATTCACTCCCTG---CGCCAG 1892 Query 100486 CAA---TTTCACGGCGTGATCCGTGTTGTACAGCTCGTTCGGGTTCCAACTCGGCGCGTA 100542 ||| ||| || | || | |||| || || || ||||| |||||||| Sbjct 1891 CAAGTATTTTACTCCAAAGTCAGATGTGTAAGTTTCCTTGGGATTCCACGCAGGCGCGTA 1832 Query 100543 GAGAGTGGTTTGGTAGCCCAA----ATCGGTGTTTGACCAGGCGCCTTTAAAATCGTAGC 100598 | | ||||| | | |||| ||| ||||||||||| || || || ||||| | Sbjct 1831 CAATGGCGTTTGAT-GTCCAAGAGTATCA---TTTGACCAGGCTCCCTTGAAGTCGTAAC 1776 Query 100599 TCAT-AAGAAATATTTTATCGAGAAGCTTTTGCGCAACGTCGTACTGTACCACAGCAATT 100657 |||| |||||| || | ||| | | ||||| || | |||| | || || ||| Sbjct 1775 TCATCAAGAAA-ATATGATCCATATAATTTTGAGCTTTGCCGTAGTCAACAACTTGGATT 1717 Query 100658 TTGTCATAGCCGGAACTGATTGCGCTTGTCAACTCGTACGTTTTGCCCGTTTGCAGTTGT 100717 || || | || | ||| || || || || ||||| | || || | | || || Sbjct 1716 TTATCCCATCCAGCACTAATAGCAGAAGTTAATTCGTATTTCTTACCATTCTT-AGCTGA 1658 Query 100718 -AGCTGGTCCAGCATCGCGCGCAATTCCTTCAGTAAAATGTTGTACGTGTCGGCGTCGCG 100776 |||| ||||||||| | || ||||| |||| ||| | || || | || Sbjct 1657 GAGCTCATCCAGCATCTCACGTAATTCTTTCATCAAACTTACATAACAATCACCATCT-- 1600 Query 100777 CTCCCCGTTGCCAAGAGTC-GGGTTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCAATGT 100835 || | | || || ||| ||||| || |||||||| || || |||||||| || || | Sbjct 1599 -TCTGGGCTACCGAG-GTCAGGGTTAGCACCTTTGCCACCAGGGAACTCCCAATCGATAT 1542 Query 100836 CCACGCCGTCAAAAAACTTCCACACCTGCAAAAATTCCTTGACCGAGTCCACAAACACGC 100895 | || || || || || ||||| | | ||| ||||| || || | |||||| | Sbjct 1541 CAACACCATCGAAGAATTTCCATGTTAGAAGAAACTCCTTTACTGACTGCACAAAT---C 1485 Query 100896 GCCGTTTTTCCGCATCGTGCATGAAATAGAAC---GGGTCGGACAACGTCCAGCCGCCGA 100952 | | | | | | || | ||| |||| || |||| | |||||| || || | Sbjct 1484 GTGTTCTCTTAGATTTGTCAACTAAAAAGAAGAAAGGATCGGCAAGCGTCCACCCACCAA 1425 Query 100953 TGGACGGCAGAATTTTGAGGTGCGGATTGGCCAGCTTGGCCGCCATTAGCTGACCGAAAT 101012 | || || ||||| || | | || ||| | || | ||||| || || || | Sbjct 1424 TAGATGGAAGAATCTTCAATTCAGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGT 1365 Query 101013 TGCCCTTGTACGGCTCGTTCCATGCGGACACGCCCTTTTGCGGTTTTTGTATTGCGGCCC 101072 |||| ||||| ||||||||||||| |||| || ||||| |||||||||| ||| |||| Sbjct 1364 TGCCTTTGTAGGGCTCGTTCCATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCC 1305 Query 101073 AGGGATCGTGAATGGCGACTTTGAAATCTGAACGACCCTTGCAGGAGCGCTGCAGCGCTT 101132 | |||||||| || | ||||||||| || ||| || | ||||| ||||| || |||| Sbjct 1304 ATGGATCGTGGATTGAGACTTTGAAGTCCTCACGGCCGCTACAGGATCGCTGTAGTGCTT 1245 Query 101133 CAAAACTGCCGGGAATGGTTTTGAGGGCGTCGTTGAGGCCGTCGCCGCCGCAAATGGGTA 101192 |||||||| || ||| | || |||| |||||| ||||||||||| || | Sbjct 1244 GGAAACTGCCTTCGATCTCTTTTAAACTATCATTGATGCCGTCACCGCCGCAAATTGGAA 1185 Query 101193 TGAACCCGTACAACAGATGCGAGAGATTGGG 101223 | || ||||| | || ||| | ||||| || Sbjct 1184 TAAAGCCGTAGAGCAAATGAGTAAGATTAGG 1154 >seq53127 Length=7988 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| |||||| ||||| |||||||||||||| ||||| | || ||| | || || Sbjct 6263 CACCAAGTGCAAAGTAGATTCCTTTTGAATATTATAATCTGACAGTGTACGTCCATCTTC 6204 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||||||| || ||| ||||||| ||||| || || || | ||| |||||||| Sbjct 6203 CAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTG 6144 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| || || | | | ||||| || ||| ||| | || || ||||| Sbjct 6143 AATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAATGTGATAGTTTT 6084 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || | || || ||||| ||||||||| Sbjct 6083 GCCAGTCAGTGTCTTTACAAATATTTGCATT 6053 Score = 100 bits (110), Expect = 2e-16 Identities = 163/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| ||||| | |||| |||||| || || ||||| ||||||||||| || | Sbjct 6510 TTCCACCTCTCAACCGCAGTACCAGGTGCAAAGTTGATTCCTTCTGAATATTGTAGTCAG 6451 Query 18873 CCATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 | ||| |||||| || ||||| || || ||| |||||||||| |||||||| Sbjct 6450 ATAGTGT----GCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCT 6395 Query 18929 ACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC 18988 ||| | |||||||| || |||||| ||| || | | | ||||| || Sbjct 6394 GGGGGAATACCCTCTTTATCCTGAATTTTTGCTTTAACATTTTCAATTGTATCAGAAGCT 6335 Query 18989 TCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| ||| | || || || || || || | || || ||||||||||||||| Sbjct 6334 TCCACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTAACAAAAATTTGCATT 6281 Score = 100 bits (110), Expect = 2e-16 Identities = 163/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| || || | |||| ||||| ||||| ||||| ||||||||||| || | Sbjct 6738 TTCCACCTCTCAGCCGCAGTACCAGATGCAAAGTAGATTCCTTCTGAATATTGTAGTCAG 6679 Query 18873 CCATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 | ||| |||||| || ||||| || || ||| |||||||||| |||||||| Sbjct 6678 ATAGTGT----GCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCT 6623 Query 18929 ACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC 18988 ||| | ||||||||| || ||||||| || || | | | ||||| || Sbjct 6622 GGGGGAATGCCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCT 6563 Query 18989 TCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| ||| | || || ||||| || || | || || ||||| ||||||||| Sbjct 6562 TCCACTTCCAATGTGATAGTTTTGCCAGTCAGTGTCTTTACAAATATTTGCATT 6509 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| || || || || | |||||| ||||| || || ||||| |||||||| | Sbjct 6054 TTCCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAATCAG 5995 Query 18873 CCATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 | ||| |||||| || ||||| || || ||| |||||||||| |||||||| Sbjct 5994 ATAGTGT----GCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCT 5939 Query 18929 ACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC 18988 ||| | |||||||| || |||||| ||| || | | | ||||| |||| Sbjct 5938 GGGGGAATTCCCTCTTTATCCTGAATTTTTGCTTTAACATTTTCAATTGTATCAGAAGGC 5879 Query 18989 TCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || ||| | || || || || || || | || || || |||||||||||| Sbjct 5878 TCAACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACGAAAATTTGCATT 5825 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || || | |||||| ||||| ||||| || ||||| || || | || ||| | || Sbjct 5809 AAAACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCTGACAGTGTGCGCCCATCT 5750 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 |||| || || || || |||| ||||| || ||||| || | ||| || ||||| Sbjct 5749 TCCAATTGCTTTCCGGCGAAAATTAGTCTTTGTTGATCTGGAGGGATGCCTTCCTTGTCT 5690 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||| || ||||| | ||| ||||| || ||| ||| | || |||||| Sbjct 5689 TGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATGGTT 5630 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAATCTCTTATAAA 19058 || || ||||||||||| || || |||||||| | ||||| | | ||| Sbjct 5629 TTCCCAGTTAAAGTTTTTACGAAGATTTGCATGATGAATCTGTAAGAAA 5581 >seq45806 Length=6479 Score = 102 bits (112), Expect = 7e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25230 CGCAAAAACGGGCATTGCGGCGCCCATTTTTGATGATCGCGAGCCGGGTCGTCGCCCGCC 25289 ||||| || ||||| || |||||||| || || || || || ||||||||||| Sbjct 4965 CGCAAGAAAGGGCACTGAGGCGCCCAGCGCTGGTGGTCCTTGGCGGGATCGTCGCCCGCA 4906 Query 25290 TCCCAGCGCATAATCTCCACTTTGCAAAACGCGCAGCGCACTTCGTCGCCGCGTCCCAAG 25349 |||| |||||| || ||||| |||||||||||||| ||||| |||||||| |||| Sbjct 4905 ACCCATTTCATAATTTCTACTTTACAAAACGCGCAGCGTACTTCATCGCCGCGGCCCAGA 4846 Query 25350 TAGTAGAACCCATT 25363 || ||||| ||||| Sbjct 4845 TAATAGAAGCCATT 4832 >seq31223 Length=3647 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || |||||||||||||| ||||| | | ||| | | || ||||| ||||| || Sbjct 305 GTCGATTCCTTTTGAATATTATAATCAGATAATGTACGGCCATCTTCCAGTTGTTTTCCA 364 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| ||||||| ||||| ||||| ||| | ||||||||||| || || || Sbjct 365 GCAAAAATAAGCCTCTGTTGATCTGGGGGAATACCCTCTTTGTCTTGGATCTTTGCCTTC 424 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | ||| ||| ||| ||||| || | || |||||||| ||||| | ||| Sbjct 425 ACATTTTCGATAGTGTCGGACGGCTCTACCTCTAAAGTGATGGTTTTTCCTGTAAGAGTC 484 Query 19025 TTGACAAAAATTTGCATT 19042 || ||||| || |||||| Sbjct 485 TTAACAAAGATCTGCATT 502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413372230077916