Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq31223 129 4e-25 seq207359 102 5e-17 seq44559 100 2e-16 seq53127 96.9 2e-15 seq88586 93.3 3e-14 >seq31223 Length=3647 Score = 129 bits (142), Expect = 4e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| || | || || |||||||| ||||| || ||||| | | || || | Sbjct 515 CGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAAAGAGTGCGTCCG 574 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||||||||||||| || || |||||||| || || | || |||||||| || Sbjct 575 TCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTG 634 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| |||||| ||| ||| || ||| |||| ||| |||| ||| || Sbjct 635 TCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAATG 694 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTAT 33375 ||||| |||||||| ||||| || || || ||||| || || Sbjct 695 GTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTTGAT 735 Score = 98.7 bits (108), Expect = 6e-16 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| || | || || ||||| || || |||||||| || || || ||||| Sbjct 46 ACCACCTCTTAAACGAAGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTATAGTCAGA 105 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || | | || || |||||||| || ||| || | |||||| || || | || Sbjct 106 CAGTGTACGACCATCTTCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCTGGAGG 165 Query 33262 TATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 ||||||||||| || | | | || ||| || ||| ||| ||||| | || Sbjct 166 AATGCCTTCTTTGTCTTGGATTTTAGC---TTTCACATTTTCAATTGTGTCAGAAGCTTC 222 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || | ||| || |||||||| || || ||||| || ||||||||||| Sbjct 223 AACTTCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAACAAAAATTTGCAT 273 >seq207359 Length=487 Score = 102 bits (112), Expect = 5e-17 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| || | || || ||||| || || |||||||| || ||||| ||||| Sbjct 442 ACCACCTCTTAAACGAAGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGA 383 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || | | || || |||||||| || ||| || | |||||| || |||| || Sbjct 382 CAGTGTACGACCATCTTCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGG 323 Query 33262 TATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 ||||||||||| || | | | || ||| || ||| ||| ||||| | || Sbjct 322 AATGCCTTCTTTGTCTTGGATTTTAGC---TTTCACATTTTCAATTGTGTCAGAAGCTTC 266 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || | ||| || |||||||| || || ||||| || || |||||||| Sbjct 265 AACTTCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAACAAAGATTTGCAT 215 >seq44559 Length=2984 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||| || |||| || |||||||| || |||||||||||||||||| || | || || Sbjct 645 CACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGACAAAGTGCGACCATCTTC 586 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 ||||||||||||| ||| || | ||| || ||||| | ||| ||||| || || || Sbjct 585 CAATTGCTTTCCAGCAAAAATGAGACGCTGTTGGTCTGGGGGGATGCCCTCCTTATCCTG 526 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 || ||| || | | || ||||| |||| || ||||| || || || || Sbjct 525 TATTTTAGCTTTGACATTCTCGATTGTGTCAGATGGTTCTACTTCCAGGGTAATGGTCTT 466 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || | ||||| || || |||||||| Sbjct 465 TCCAGTCAATGTTTTGACAAATATTTGCAT 436 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| | |||| || ||||| | || ||||||||||| || ||||| ||||| Sbjct 435 ACCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGA 376 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || || | || || | ||||| ||| ||| || | |||||| || || | ||| Sbjct 375 CAGGGTGCGACCATCTTCTAGCTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGGGG 316 Query 33262 TATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || || ||||| || |||| |||| |||| ||| ||| ||||| || | Sbjct 315 AATACCCTCTTTATCTTGAATCTTAGCCT---TTACATTTTCAATGGTGTCAGATGGCTC 259 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||||||||| || || || || || || || || || |||||||| Sbjct 258 CACCTCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 208 >seq53127 Length=7988 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||||| ||||| || |||||||| || ||||| || || ||||| || || ||| Sbjct 7420 CCACCTCTTAGACGCAAAACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCCGAC 7361 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || || || || |||| |||||||||| || || | | ||| || || | || Sbjct 7360 AATGTGCGTCCATCTTCCAGTTGCTTTCCAGCGAAAATCAGTCTTTGTTGATCTGGAGGA 7301 Query 33263 ATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 |||||||| || || |||| |||| | || ||| || || || | || Sbjct 7300 ATGCCTTCCTTATCTTGAATCTTTGCCT---TAACATTTTCTATTGTATCAGAAGCTTCC 7244 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||| ||| || ||||| || || || || ||||| ||||||||||| Sbjct 7243 ACTTCCAAAGTGATAGTTTTCCCAGTCAGTGTCTTTACAAAAATTTGCAT 7194 Score = 91.5 bits (100), Expect = 9e-14 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||||| ||||| || |||||||| || ||||| || || ||||| || || ||| Sbjct 7192 CCACCTCTTAGACGCAAAACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCTGAC 7133 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || || || || |||| ||||||||| || || | | ||| ||||| | || Sbjct 7132 AATGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGGTCTGGAGGA 7073 Query 33263 ATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 |||||||| || || |||| |||| | || ||| || || || | || Sbjct 7072 ATGCCTTCCTTGTCTTGAATCTTTGCCT---TAACATTTTCTATTGTATCAGAAGCTTCC 7016 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||| ||| || ||||| || || | ||||| || ||||||||||| Sbjct 7015 ACTTCCAAAGTGATAGTTTTCCCAGTCAATGTTTTCACAAAAATTTGCAT 6966 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | ||| | || | ||||| || || ||||| || || ||||||||||| Sbjct 6052 CCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAATCAGAT 5993 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | || || || || | ||||||||| ||| || | | |||||| || | ||| Sbjct 5992 AGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGA 5933 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || || ||||| || ||| ||| || ||| ||| || || || | ||| Sbjct 5932 ATTCCCTCTTTATCCTGAATTTTTGCTTTAACATTTTCAATTGTATCAGAAGGCTCAACT 5873 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| ||| || || || || || || || ||||||||||||||||| Sbjct 5872 TCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACGAAAATTTGCAT 5826 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || || |||| ||||| || || ||||| || || || || || ||||| || || ||| Sbjct 5824 CCACCCCTTAGACGCAAAACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCTGAC 5765 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | || | || |||||||||||||| || |||| | ||| || || | || Sbjct 5764 AGTGTGCGCCCATCTTCCAATTGCTTTCCGGCGAAAATTAGTCTTTGTTGATCTGGAGGG 5705 Query 33263 ATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 |||||||| || || |||| ||| ||||| ||| || || || | || Sbjct 5704 ATGCCTTCCTTGTCTTGAATCTTTGCC---TTTACGTTTTCGATTGTATCAGAAGCTTCC 5648 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || |||| || || ||||| || || | |||||||||||| ||||||||| Sbjct 5647 ACTTCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCATG 5597 >seq88586 Length=4530 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||| | ||||||||| || || ||||| || ||||| |||||||| | || || || Sbjct 2196 CACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTC 2255 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTC 33276 | ||| || ||| ||| || |||||||||||||| | || || ||||| || || Sbjct 2256 TAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTG 2315 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 | | | || ||| || ||| || || || || | || || || || || || Sbjct 2316 GATTTTAGC---TTTAACATTTTCTATAGTATCAGAGGCCTCCACCTCGAGGGTAATGGT 2372 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| |||||||| || || |||||||||||||| Sbjct 2373 TTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 2405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 317854445373372