Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq88586 105 5e-18 seq31223 102 6e-17 seq53127 96.9 2e-15 seq207359 86.0 4e-12 >seq88586 Length=4530 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 || |||||||| || || || ||| ||| |||| || | |||||| || ||||| Sbjct 2215 TCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAG 2274 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| ||||||||||| | || | |||||| |||||| ||||| ||| || | Sbjct 2275 ATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATTTTAGCTTTAACATTT 2334 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 | | |||||| | | |||||| |||| ||||| |||||||| || | ||||| || Sbjct 2335 TCTATAGTATCAGAGGCCTCCACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACG 2394 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 2395 AAAATTTGCAT 2405 >seq31223 Length=3647 Score = 102 bits (112), Expect = 6e-17 Identities = 163/230 (71%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GTTTAATTGACGCTCATC 43968 || ||||| || || || ||||||||||||||||| || | | || || | || Sbjct 518 AATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAAAGAGTG-CGTCCGTC 576 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 |||||||| ||||| || || ||||| ||||| || || |||| | ||||| || || Sbjct 577 TTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTC 636 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | |||||| ||| || | ||| |||||| | || || || || | ||||| || Sbjct 637 TTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAATGGT 696 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCGAGTCTTTGTAACA 44138 |||||| || | || |||||||| || ||||| | || | | ||||||| Sbjct 697 TTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTTGA-TATCTGTAACA 745 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || || |||||||| || || ||||||||||||||||| |||| ||| |||| Sbjct 290 AATACTAAATGTAGGGTCGATTCCTTTTGAATATTATAATCAGATAATGTACGGCCATCT 349 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 |||| ||||||||| ||||| || | || || || || | || | ||| ||||| ||| Sbjct 350 TCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGGAATACCCTCTTTGTCT 409 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 || ||| || || | | | ||| || | |||||| || || | || || ||| Sbjct 410 TGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTCTACCTCTAAAGTGATGGTT 469 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || | |||||| ||||| || ||||| Sbjct 470 TTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 501 >seq53127 Length=7988 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 || ||||||||||||||||| | | ||| |||| |||| |||||||||||||| Sbjct 6244 TCCTTTTGAATATTATAATCTGACAGTGTACGTCCATCTTCCAGCTGTTTTCCTGCAAAA 6185 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 || | || || ||||| |||| | |||||||| ||| ||||||| || || | Sbjct 6184 ATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTGAATTTTTGCCTTAACATTT 6125 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 | | ||||| | | ||||| || | || || ||||| || || | ||||| ||| Sbjct 6124 TCTATTGTATCAGAAGCTTCCACTTCCAATGTGATAGTTTTGCCAGTCAGTGTCTTTACA 6065 Query 44111 AATATTTGCAT 44121 ||||||||||| Sbjct 6064 AATATTTGCAT 6054 >seq207359 Length=487 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || || |||||||| || || ||||||||||||||||| |||| ||| |||| Sbjct 198 AATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGATAATGTACGGCCATCT 139 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 |||| ||||||||| || || |||| || || || || | || | ||| ||||| ||| Sbjct 138 TCCAGTTGTTTTCCAGCGAAAATCAGCCTCTGTTGATCTGGGGGAATACCCTCTTTGTCT 79 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 || ||| || || | | | ||| || | ||| || || || | ||||| ||| Sbjct 78 TGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGTTCTACCTCAAGAGTAATGGTT 19 Query 44090 TTACCGGTTAAAGTCTT 44106 || || || | |||||| Sbjct 18 TTTCCTGTAAGAGTCTT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353750192230872