Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq21383 223 3e-53 seq53127 102 7e-17 seq207359 98.7 8e-16 seq31223 98.7 8e-16 seq44559 91.5 1e-13 >seq21383 Length=8822 Score = 223 bits (246), Expect = 3e-53 Identities = 638/971 (66%), Gaps = 29/971 (3%) Strand=Plus/Minus Query 101017 ATAATCGACAACGCCGTCTTCCCAAGTACCGGTCACGGGCCCGGCAGCTGTGCCTGTGAA 101076 ||| || || || ||||||| |||||| || | || || || | ||| |||||||||| Sbjct 2047 ATAGTCAACCACTCCGTCTTGCCAAGTTCCTTTGACAGGTCCAGTAGCGTTGCCTGTGAA 1988 Query 101077 ---ATAGTTGTCACCGTCATAGCCTGCCACGCCTGTCCAACCGCGGCCGTACATGGCAAC 101133 | |||||| || || | || ||||| |||||||| || || ||||| ||||| Sbjct 1987 GGGAATGTTGTCTTTGTAAT--CATGA-ACGCCAGTCCAACCACGACCATACATAGCAAC 1931 Query 101134 GCCCACAATAATTTTGCGCGGGTCTACGCCCTGGTTCGTGAGCGA---TTTAACAGCGTA 101190 || || | ||| || || | || ||||| || ||| | ||| || | | Sbjct 1930 ACCTACTACAATCTTCTTAGGATTCACTCCCTG---CGCCAGCAAGTATTTTACTCCAAA 1874 Query 101191 ATCCGTGTTGTACAGCTCGTTTGGGTTCCAACTCGGCGCGTAGAGTGTAGTTTGATAGCC 101250 || | |||| || || || ||||| |||||||| | || ||||||| || Sbjct 1873 GTCAGATGTGTAAGTTTCCTTGGGATTCCACGCAGGCGCGTACAATGGCGTTTGATGTCC 1814 Query 101251 CAGATCGATGTTTGACCACGCGCCTTTGAAATCGTAGCTCATGAGAAATATTTTATCGAG 101310 ||| |||||||| || || ||||| ||||| ||||| | || || | ||| | Sbjct 1813 AAGAGTATCATTTGACCAGGCTCCCTTGAAGTCGTAACTCATCAAGAAAATATGATCCAT 1754 Query 101311 GAACTTTTGCGCAAGATCGTATTTTACTACAGCAATTTTGTCGTGACCCGAACTAATTGC 101370 | ||||| || |||| | || || ||||| || || | |||||| || Sbjct 1753 ATAATTTTGAGCTTTGCCGTAGTCAACAACTTGGATTTTATCCCATCCAGCACTAATAGC 1694 Query 101371 ACTTGTTAATTCGTATGTTTTGCCCGTTTGCAGTTGCAA-CTCGTCCAGCATTGCGCGCA 101429 | |||||||||||| | || || | | || || | ||| |||||||| | || | Sbjct 1693 AGAAGTTAATTCGTATTTCTTACCATTCTT-AGCTGAGAGCTCATCCAGCATCTCACGTA 1635 Query 101430 ATTCTTTCAGTAAAATGTTGTACGTGTCAGCGTCGCGTTCTTTGTTGCCGAGTGTTGGGT 101489 ||||||||| ||| | || ||| | || |||| | | ||||| |||| Sbjct 1634 ATTCTTTCATCAAACTTACATAACAATCACCATC---TTCTGGGCTACCGAGGTCAGGGT 1578 Query 101490 TGGCGCCTTTACCACCCGGAAACTCCCAATCGATGTCTACCCCGTCAAAAAATTTCCAAA 101549 | || ||||| ||||| || |||||||||||||| || || || || || |||||||| Sbjct 1577 TAGCACCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATG 1518 Query 101550 CCTGCAAAAATTCTTTGACAGAATCCACAAACACACGCCGTTTTATC---GCGTCGTGCA 101606 | | ||| || || || || | |||||| ||| || || | | || | Sbjct 1517 TTAGAAGAAACTCCTTTACTGACTGCACAAAT------CGTGTTCTCTTAGATTTGTCAA 1464 Query 101607 -TATAAT--AGAACGGGTCGGACAATGTCCAGCCGCCGATGGACGGCAAAATTTTAAGGT 101663 || || |||| || |||| | ||||| || || || || || | ||| || | | Sbjct 1463 CTAAAAAGAAGAAAGGATCGGCAAGCGTCCACCCACCAATAGATGGAAGAATCTTCAATT 1404 Query 101664 GTGGATTGGCCAATTTGGCCGCCATTAGCTGACCAAAGTTGCCTTTGTAGGGCTCGTTCC 101723 || ||| ||| | ||||| || |||||||||||||||||||||||||||| Sbjct 1403 CAGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCC 1344 Query 101724 AAGCAGATACACCTTTCTGCGGTTTTTGTATTGCGGCCCAAGGATCGTGGATAGCAACTT 101783 | | ||| | ||||| || |||||||||| ||| ||||| ||||||||||| | |||| Sbjct 1343 ATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTT 1284 Query 101784 TAAAATCTGAACGGCCCTGGCAAGAACGTTGCAACGCTTCAAAACTACCGGGTATGGTTT 101843 | || || |||||| || || || || | |||| ||||| || || || Sbjct 1283 TGAAGTCCTCACGGCCGCTACAGGATCGCTGTAGTGCTTGGAAACTGCCTTCGATCTCTT 1224 Query 101844 TGAGGGCGTCGTTAAGGCCATCGCCGCCACAAATGGGTATGAACCCGTACAACAAATGTG 101903 | | || || | ||| || ||||| ||||| || || || ||||| | |||||| | Sbjct 1223 TTAAACTATCATTGATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTAGAGCAAATGAG 1164 Query 101904 AGAGGTTGGGCAGCGGCACTTTGTCCACCGGAAAGTTGCGACCATACACGCCCCATTCTA 101963 || || || | || | ||||| || || || | | ||| || |||||||||| Sbjct 1163 TAAGATTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGATAGACACCCCATTCTA 1104 Query 101964 CAAAATACGCA 101974 | || || ||| Sbjct 1103 CGAAGTAGGCA 1093 >seq53127 Length=7988 Score = 102 bits (112), Expect = 7e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 || |||||| || | |||||||| ||||| || || ||||| || || ||| Sbjct 6266 CAGCACCAAGTGCAAAGTAGATTCCTTTTGAATATTATAATCTGACAGTGTACGTCCATC 6207 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| ||||| || ||| |||||||||||||||| || || | |||||||||||| Sbjct 6206 TTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTC 6147 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 ||||||| || || | | | | ||| || |||| ||||| || || || Sbjct 6146 TTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAATGTGATAGT 6087 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||||| |||| || || ||||| ||||||||| Sbjct 6086 TTTGCCAGTCAGTGTCTTTACAAATATTTGCATT 6053 >seq207359 Length=487 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20012 GTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCC 20071 |||||||||||||| |||||||| || || || | |||||| ||||| |||||| Sbjct 411 GTAGATTCTTTTTGGATGTTGTAGTCAGACAGTGTACGACCATCTTCTAATTGCTTGCCC 352 Query 20072 GCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 20131 ||| ||||||| | |||||||| || | |||||||||||| ||||| |||| Sbjct 351 GCAAAAATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTC 292 Query 20132 ACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTT 20191 || | ||| | || || ||| ||| | ||||| ||||| || || | ||| Sbjct 291 ACATTTTCAATTGTGTCAGAAGCTTCAACTTCTAAAGTAATTGTTTTTCCAGTGAGTGTT 232 Query 20192 TTGACAAAAATTTGCAT 20208 || ||||| |||||||| Sbjct 231 TTAACAAAGATTTGCAT 215 >seq31223 Length=3647 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20012 GTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCC 20071 |||||||||||||| ||||| || || || || | |||||| ||||| |||||| Sbjct 77 GTAGATTCTTTTTGGATGTTATAGTCAGACAGTGTACGACCATCTTCTAATTGCTTGCCC 136 Query 20072 GCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 20131 ||| ||||||| | |||||||| || | |||||||||||| ||||| |||| Sbjct 137 GCAAAAATAAGACGTTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTC 196 Query 20132 ACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTT 20191 || | ||| | || || ||| ||| | ||||| ||||| || || | ||| Sbjct 197 ACATTTTCAATTGTGTCAGAAGCTTCAACTTCTAAAGTAATTGTTTTTCCAGTGAGTGTT 256 Query 20192 TTGACAAAAATTTGCAT 20208 || |||||||||||||| Sbjct 257 TTAACAAAAATTTGCAT 273 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| || || | | ||| ||||| || || |||||||||||||| || || || || Sbjct 501 TTCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAG 560 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| ||||||||||| || || || |||| | | |||||||| | Sbjct 561 AAAGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAG 620 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||| ||||| |||||| ||| || | ||| || |||| |||||| Sbjct 621 GAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAA 680 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 ||||| ||||||||||| || || | ||||| ||||| || |||||||| Sbjct 681 CTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 732 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | || ||| || |||||||| || ||||| ||||| || || ||||| Sbjct 275 CCGCCACGAAGCCGCAATACTAAATGTAGGGTCGATTCCTTTTGAATATTATAATCAG-- 332 Query 20042 ATAGTTTTAGA--ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 ||| | | | |||||||| |||||| || ||| ||||||||||||||||||| || Sbjct 333 ATAATGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGG 392 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | || |||||||| || ||| ||||| | | | || ||| || || Sbjct 393 GAATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTCTA 452 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || | || |||||||| || || | || || ||||| || |||||| Sbjct 453 CCTCTAAAGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCATT 502 >seq44559 Length=2984 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||| || || || || || ||||| || || |||||||| || ||| | |||||| Sbjct 645 CACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGACAAAGTGCGACCATCTTC 586 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 |||||| || || ||| |||| || | |||||| || ||| | ||| || || || Sbjct 585 CAATTGCTTTCCAGCAAAAATGAGACGCTGTTGGTCTGGGGGGATGCCCTCCTTATCCTG 526 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||||| ||| || | | | | || ||||| ||||| ||||||||| || Sbjct 525 TATTTTAGCTTTGACATTCTCGATTGTGTCAGATGGTTCTACTTCCAGGGTAATGGTCTT 466 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| ||||||||||| |||||||| Sbjct 465 TCCAGTCAATGTTTTGACAAATATTTGCAT 436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418372108773534