Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_005841.1 Length=41391 Score E Sequences producing significant alignments: (Bits) Value seq237313 277 5e-70 seq237382 273 6e-69 seq237567 250 7e-62 >seq237313 Length=339 Score = 277 bits (306), Expect = 5e-70 Identities = 210/248 (85%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 21936 ATGAGCAGATTAACCTCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 21995 ||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 86 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 145 Query 21996 TGGGCTGTTAATCATTATCGTGATAACGCCATCACCTACAAAGTCCAGCGCGACACTGTT 22055 ||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| | Sbjct 146 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 205 Query 22056 ACTCAAAAGCTGGCGCTGGCGAACGCGACAATTACCGATATGCAAACGCGCCAGCGTGAT 22115 | | | ||| ||||||||||||| ||||||| || ||||| | ||| ||||||||| Sbjct 206 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGAT 265 Query 22116 GTAGCAGAACTTGACGCCAGATACACAAAGGAGCTTGCTGATGCGAAAGCTGAGAATGAT 22175 || || | || || || | |||||| |||||| | |||||||| |||||||| |||||| Sbjct 266 GTTGCTGCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCTGAAAATGAT 325 Query 22176 GCTCTTCG 22183 ||||| || Sbjct 326 GCTCTGCG 333 >seq237382 Length=259 Score = 273 bits (302), Expect = 6e-69 Identities = 160/166 (96%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 18733 AAGAAAGCGTCGAGCGGGCTTTAACGTGCGCTAACTGCGGTCAGAAGCTGCATGTGCTGG 18792 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 94 AAGAAAGCGTCGAGCGAGCTTTAACGTGCGCTAACTGCGGTCAGAAGCTGCATGTGCTGG 153 Query 18793 AAGTTCACGTATGTGAGCACTGCTGCGCAGAACTGATGAGCGATCCGAATAGCTCAATGT 18852 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 154 AAGTTCACGTGTGTGAGCACTGCTGCGCAGAACTGATGAGCGATCCGAATAGCTCGATGC 213 Query 18853 ACGAGGAAGAAGACGATGGCTAAACCAGCGCGAAGACGATGCAAAA 18898 ||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct 214 ACGAGGAAGAAGATGATGGCTAAACCAGCGCGAAGACGATGTAAAA 259 Score = 86.0 bits (94), Expect = 2e-12 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 18300 ACATTCAACTACACGGCTCACCTGTGGGATATCCGGTGGCTTAGAGAACGTGCGAGGAAA 18359 || |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 1 ACCTTCAACTACACGGCTCACCTGTGGGATATCCGGTGGCTAAGACGTCGTGCGAGGAAA 60 >seq237567 Length=272 Score = 250 bits (276), Expect = 7e-62 Identities = 158/169 (93%), Gaps = 3/169 (2%) Strand=Plus/Plus Query 21089 CTTCGTGAGGATGGG-GGCAAGAGGTTGCGCTAACAACCTCCTGCCGTTTTGCCCGTGCA 21147 |||||||| ||| |||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 14 CTTCGTGAAAGCGGGTGGCAGGAGGTCGCGCTAACAACCTCCTGCCGTTTTGCCCGTGCA 73 Query 21148 TATCGGTCACGAACAAATCTGATTACTAAACACAGTAGCCTGGATTTGTTCTATCAGTAA 21207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 74 TATCGGTCACGAACAAATCTGATTACTAAACACAGTAGCCTGGATTTGTTCTATCAGTAA 133 Query 21208 TCGACCTTATTCCTAATTAAATAGAGCAAATCCCCTCAATGAAGGGGTA 21256 |||||||||||||||||||||||||||||||||||| | || |||||| Sbjct 134 TCGACCTTATTCCTAATTAAATAGAGCAAATCCCCTTATTG--GGGGTA 180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131956210033804