Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq32346 111 2e-19 seq38285 98.7 1e-15 >seq32346 Length=5591 Score = 111 bits (122), Expect = 2e-19 Identities = 160/219 (73%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 21477 ATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAAC 21536 || |||||| || | || |||| |||||||| || | ||||||| || || || | Sbjct 2959 ATACAAAATTACGAAACATACCT-CATCCCTAGAAATAAGTTCATTACTGAAAGTCAATC 3017 Query 21537 CGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAA 21595 ||||||| | |||| ||||| |||||||||||||| ||||| ||| ||||| || || Sbjct 3018 CGGGCATCAGACCTCGTTTTTTCAACCAAAATATTGAAGCAAA-GCTGCCTGAGAAAAAT 3076 Query 21596 ATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGAT-TCTTTATCCAA 21654 || |||||||| || ||||| |||| || ||||| || |||||| | |||| | | Sbjct 3077 ATTCCCTCAACTGCTGCAAAAGCAATTATACGTTCTCCAAATGTAGCTGTCTTGCTGC-C 3135 Query 21655 TATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACA 21693 ||||| | | ||||| | |||||| | |||| ||| Sbjct 3136 GATCCACTGTAACGCCCAGTCTGCCTTCTTCTTAACACA 3174 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 21125 ATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATT 21184 |||||||| ||||||||||| | ||||||||| || || | ||| | |||| Sbjct 889 ATTTAAAATTCAGCATCTAAAGTGAAAACATTGTCCATAGGTTGCGCCATCACTCCCCAC 948 Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATAT-AGA 21243 || || || || | |||| | || || || |||||||| || ||||||||||| || ||| Sbjct 949 TTCTGGTATTCTCCAACTTTCTTCTCAAAGAAATTTGTTTTGCCTTCCAATGAGATGAGA 1008 Query 21244 TTCCATAAAATCAAATGGATT 21264 || ||||||||| |||||||| Sbjct 1009 TT-CATAAAATCGAATGGATT 1028 >seq38285 Length=4996 Score = 98.7 bits (108), Expect = 1e-15 Identities = 219/323 (68%), Gaps = 8/323 (2%) Strand=Plus/Plus Query 131860 TCCTATGACTCCTGTTAAACCTATGTTGGCTGATGTATGCGAATCTCTAGAAAAAGCAAT 131919 || ||||||||| || ||| ||||| ||||| | ||| |||| | |||| || || Sbjct 1963 TCTTATGACTCCAGTATTACCGATGTTAGCTGAAGCTTGCAAATCAGTTGAAATGGCTAT 2022 Query 131920 AGATAAATATAAAGATGGAATGTATTCAGAGGTAAAATATGATGGGGAGCGTGTACAAAT 131979 | |||| | | |||| |||| || ||| ||||||||||||| || || || ||| | Sbjct 2023 GAAAAAATGTCCAAATGGCATGTTCTCTGAGATAAAATATGATGGAGAACGGGTTCAAGT 2082 Query 131980 TCATAAAAAAGATAATGTATACAATTATTTTAGTAGAAATTTAAAACCTGTTCTTACTCA 132039 |||||||| | |||| | ||| |||||| | |||||||| || | |||| Sbjct 2083 CCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 2142 Query 132040 TAAAATTGATGGATTTGATAAACTGTTGA-CTGATGCATTTCCCACAGCAAAAAACTTCA 132098 ||| || | |||| | | | | || | | | |||||||| | || | | |||| | Sbjct 2143 CAAAGTT-AGTCATTTTAAAGATTATTTACCCAAAGCATTTCCTAAAGGAGATGACTTGA 2201 Query 132099 TTTTAGATGCGGAATTAATAATGATAGAT-ACAAAA--TCAAATTCATTTTTACCATTTG 132155 |||| ||||| ||| || | ||| | ||| ||| | ||| || || || || | Sbjct 2202 TTTTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCA---TTGCCTTTCG 2258 Query 132156 GTTCATTAGGTATACATaaaaaa 132178 || |||||||||| || ||| || Sbjct 2259 GTACATTAGGTATTCACAAACAA 2281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530320961541360