Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq24004 535 5e-147 seq32346 91.5 2e-13 >seq24004 Length=11461 Score = 535 bits (592), Expect = 5e-147 Identities = 1107/1624 (68%), Gaps = 45/1624 (3%) Strand=Plus/Minus Query 61975 TTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGAT 62034 |||||||| | ||||| | || || ||||| | | | ||| ||||| || |||| | Sbjct 10016 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 9957 Query 62035 AGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGG 62094 |||||||||| ||||||| || | |||| ||| ||||| || ||| ||||| Sbjct 9956 AGTACATTCCTGTTTTTAATCCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 9897 Query 62095 AATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCC 62154 ||| | || | || | ||| || || | |||||||||||| || || || ||||| | Sbjct 9896 CATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTCCTC 9837 Query 62155 TGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACT 62213 | || || ||||| | |||| || || ||| ||| ||||| | ||||| || || | Sbjct 9836 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 9777 Query 62214 CGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTGCCATAATC 62270 | |||| | |||| |||| ||| | |||| | || |||||| | ||||| Sbjct 9776 CTCTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATA 9718 Query 62271 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGA 62330 ||| || || || |||| ||| || | | || ||| | | || ||||| | Sbjct 9717 AGATTTTTCATATCGTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGG 9658 Query 62331 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 62390 || ||||| ||||||||||||| || ||||| | ||||||||| ||| | ||| Sbjct 9657 TTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGT 9598 Query 62391 TCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62450 || | || ||| | || || | |||||| ||||| || |||||||||||||| || | | Sbjct 9597 TCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTATC 9538 Query 62451 AATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCC 62508 |||| | ||| | | ||| ||||| || || || ||||| || |||| | || Sbjct 9537 AATAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCC 9480 Query 62509 AAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTAC 62567 |||| || | || || || ||||| | || || | || Sbjct 9479 AAAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGCTGGAC 9420 Query 62568 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62627 ||| |||||| ||||| ||||| || ||||||| ||||||||| || |||||| Sbjct 9419 TC-CCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAAT 9361 Query 62628 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 62687 ||||| |||||||| ||||| || || | | ||| ||| | ||||| | || || Sbjct 9360 GCACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACTTTCG 9301 Query 62688 AATGGATAATTTAAGAGA-ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62746 | | ||| | | | | | |||||| || || | || |||||||||||||| ||||| Sbjct 9300 TAAG-ATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGG 9242 Query 62747 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 62806 |||||||||| |||| || ||| ||||| || | ||||||| |||||| ||| |||| Sbjct 9241 TCTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACATCAATAAC 9182 Query 62807 TTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA 62863 ||| || | |||| | ||||| ||||| | || || | ||| ||||| ||| Sbjct 9181 TTTGTTTAAATTTTGAGTTACAAT--CTTTGTG-ATTTCTTTTAATTTTTTAAAATTAAA 9125 Query 62864 TCGCCCATCTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTC 62923 || || | ||||||||||| | || | || || || || || || || || || Sbjct 9124 TCTGTTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTC 9065 Query 62924 ATTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCC 62980 || | || | | ||||| | | ||||||||||||||| ||||| || ||||| || Sbjct 9064 AT---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCC 9008 Query 62981 TAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACC 63040 | ||||| ||||||||||||| ||||||| ||||||||||| | ||| |||| ||||| Sbjct 9007 AAGATTTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACC 8948 Query 63041 AGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTT 63100 ||| || | || | ||||||||| | ||||| | || |||| | | | | ||| Sbjct 8947 AGTCTCCACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGA--CTTGTTTT 8890 Query 63101 GTATCTCCTTTCTCT--TTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACA 63158 || || ||| ||| ||| ||| | ||| | | || || || ||| || || || Sbjct 8889 ATAAATCGTTTTTCTTCTTCATATTTGGCATATAGTTCGTCAAATTCCTCT-CCAAAGCA 8831 Query 63159 -TTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT--- 63214 | | | |||||||| |||| |||||||| | ||| || |||||||| Sbjct 8830 GTCAGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAAACT---TCATCCTTTTC 8774 Query 63215 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63274 |||| ||||||||| ||||| || ||||| | ||| ||| || ||||| | ||| Sbjct 8773 TACTCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCAT 8714 Query 63275 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 ||| || || ||||| ||||| || | ||| | ||| | | ||||| | |||||| || Sbjct 8713 TTCTTCCTTACCTGTGTTCTTCTTTAAATCCAAGAATTCAAATATATCCGCATGCCAAGG 8654 Query 63335 TTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 63394 || || || || || | | || || ||||||||||| || ||||||| ||||| || Sbjct 8653 CTCTAAATAAATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGC 8594 Query 63395 GGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGA 63454 || || ||||| |||||||||||||| | | ||| ||||| | ||||| || || | Sbjct 8593 AGTATTGTTATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAGC 8534 Query 63455 GATATAGCTTCCACTG-GCACGAAT---ATTACTAATTGATAGACCTATTCCCCCTGCCA 63510 || || || ||| || | || || || || || |||||| || || || Sbjct 8533 TATGTAAGAACC-CTGAGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCAGCAG 8478 Query 63511 TTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGA 63570 |||||| |||||||| ||| ||||||| || ||| ||||||| || |||||||| || Sbjct 8477 ATTTAGAAATTAATGCACATTGTTTTAAAGTATCAAAGATACCTTCAATGCTATCGTCTT 8418 Query 63571 TCAT 63574 |||| Sbjct 8417 TCAT 8414 Score = 102 bits (112), Expect = 1e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 63755 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63814 ||| |||||||| |||||||| || ||| ||||||||||||| ||||||||||||||||| Sbjct 7901 CTTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTA 7842 Query 63815 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 63865 | ||| |||| || |||| ||| | |||| | ||| ||||| | ||| Sbjct 7841 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 7791 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 63966 TTTTTTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCC 64025 || || || || || |||| ||| |||| ||||||||||| || | |||||||||||| Sbjct 7135 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCG 7076 Query 64026 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64085 ||||| | ||| || ||| ||||| ||||| || || ||| | || | || | ||| Sbjct 7075 GGATGATCTGTGGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 7016 Query 64086 GTTACTCCATTATATATTCC 64105 ||||| ||| |||||| || Sbjct 7015 GTTACACCAGAATATATGCC 6996 >seq32346 Length=5591 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 33790 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTC 33849 || |||| ||||||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 4158 TTGGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 4217 Query 33850 CAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 || || || ||||||||||||||| |||||||| | | |||||| Sbjct 4218 CATATATCTGGATATTGGATTGGGAATATAACAAAACGTCTAGGATTT 4265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621096937800240