Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq21383 251 8e-62 seq45806 113 5e-20 >seq21383 Length=8822 Score = 251 bits (278), Expect = 8e-62 Identities = 782/1200 (65%), Gaps = 23/1200 (2%) Strand=Plus/Minus Query 51249 CCCAGGCCCTCGTGCATGGCGTTCAGTAGGTCGCCGTTGTCAGCGTCGATTTCCCACGCA 51308 || || ||| || |||||| ||||||||||| ||||| |||||||| | |||||| ||| Sbjct 2280 CCGAGACCCATGTTCATGGCATTCAGTAGGTCACCGTTATCAGCGTCCACTTCCCAAGCA 2221 Query 51309 AACAATCCCGCCAACCCGTTCGCAAGCACGTACTGGCCCTTGGCGCGAACGGATCGAGCG 51368 || | || | | | ||| || || | ||||| | ||| |||| ||| Sbjct 2220 AAGAGACCACCTAGCTTGTTATTTCTTACATATTTACCCTTTTCAATAACCGATCTAGCA 2161 Query 51369 TTGTCGAACGTGATCAGGTTGCCCGC-GATCGGTTCGAAGCCGTACGCAGCCTCGGCGAT 51427 || || | || | || | || | ||| ||| |||| |||| | || | ||||| Sbjct 2160 TTATCATAGGTTACAAGATCTCCAGTTGAT-GGTCTGAAGACGTAAGGGGCTTGGGCGAC 2102 Query 51428 CAGATCGTAGTAGAACTCGTAGT--CTTTGA-CGAACTCGTTCGCGATCTGCCGATAGTC 51484 ||||| | |||||| | | | |||| ||| || ||||| |||| || |||||| Sbjct 2101 ATTGTCGTAATGGAACTCCCACTTGCCTTGAGCGATTTCATTCGCAATCTCCCTATAGTC 2042 Query 51485 GACCACCCCATTTTCCCAGGTGCCTTCGATGGGTCCGCCGGCGACGCCGCTGAACCAGTT 51544 ||||| || | || ||| || |||| || ||||| ||| ||| |||| | Sbjct 2041 AACCACTCCGTCTTGCCAAGTTCCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAGGGAAT 1982 Query 51545 CGGTTCGTAGTCGTAGCCGGTCACGTTCGACCAGCCGCGAGCGTACATCGCCACGCCGAC 51604 ||| || | ||| | ||| | ||| || ||| | ||||| || || || || Sbjct 1981 --GTT-GTCTTTGTAATCATGAACGCCAGTCCAACCACGACCATACATAGCAACACCTAC 1925 Query 51605 GACGATCTTCT---GATTGCGCACGCCCTGTTCGAGAAGCGACGACACGGCATAGTCGGT 51661 || ||||||| |||| ||| ||||| | || | | || || |||| | Sbjct 1924 TACAATCTTCTTAGGATT---CACTCCCTGCGCCAGCAAGTATTTTACTCCAAAGTCAGA 1868 Query 51662 GGTGTACTTTTCGTCGGGGTTCCATTGGGGCGCGAACAGTGTGGTCTGGTAGCCCAGATC 51721 ||||| |||| | ||| ||||| |||||| ||| || || || | || ||| Sbjct 1867 TGTGTAAGTTTCCTTGGGATTCCACGCAGGCGCGTACAATGGCGTTTGATGTCCAAGAGT 1808 Query 51722 GGTGTTGGACCACGCACCCTTGAAATCGTAGTTCATGAGGAAAATGTAATCCAACTGCGT 51781 || ||||| || |||||||| ||||| |||| | |||||| | ||||| | | Sbjct 1807 ATCATTTGACCAGGCTCCCTTGAAGTCGTAACTCATCAAGAAAATATGATCCATATAATT 1748 Query 51782 CTGCGCCCGAGCGTAGTCGACGACTTGAATTTTATCGTAGCCCGCGCTGATGGCGCTGGT 51841 || || ||||||| || ||||| |||||||| | || || || || || || Sbjct 1747 TTGAGCTTTGCCGTAGTCAACAACTTGGATTTTATCCCATCCAGCACTAATAGCAGAAGT 1688 Query 51842 CAACAGGTA---CGAACGGTTCGTGGCGGCGCTCAACTCGTCGAGCATGTCGCGCAGCTC 51898 || ||| | || ||| | || | | | ||| || ||||| || || | || Sbjct 1687 TAATTCGTATTTCTTACCATTCTTAGCTGAG---AGCTCATCCAGCATCTCACGTAATTC 1631 Query 51899 GGTCAAAAGCGTCACGTACGTCGCACCATCGCGATCGGGATCGCCCAGGTCGGGATTGGC 51958 ||| | | || || ||||||| || || || ||||| || || || Sbjct 1630 TTTCATCAAACTTACATAACAATCACCATCT---TCTGGGCTACCGAGGTCAGGGTTAGC 1574 Query 51959 GCCTTTGCCGCCCGGAAACTCCCAGTCGACGTCGACTCCGTCGAAGAACTTCCAAGTCAG 52018 |||||||| || || |||||||| |||| || || || |||||||| ||||| || || Sbjct 1573 ACCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTTAG 1514 Query 52019 CAGAAACTCGCGAACCGATTCGACGAAGGTTGCGCGTTTGCTCGCGTCGTGCAGGAAGAA 52078 |||||||| || || | || || || | || ||| | ||||| Sbjct 1513 AAGAAACTCCTTTACTGACTGCACAAATCGTGTTCTCTTAGATTTGTCAACTAAAAAGAA 1454 Query 52079 GAACGGATCGGACAGCGTCCAACCGCCGATCGAGGGCAGAATCTTGAGCGAAGGATTGGC 52138 ||| ||||||| |||||||| || || || || || |||||||| | ||| ||| Sbjct 1453 GAAAGGATCGGCAAGCGTCCACCCACCAATAGATGGAAGAATCTTCAATTCAGGGCGGGC 1394 Query 52139 CCGTTTGGCCGCCATCAGCTGTCCAAAGTTTCCCTTGTACGGATCGTTCCAGGCCGAGAC 52198 |||| | ||| | || |||||||| || ||||| || |||||||| | || | Sbjct 1393 TTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGAAGACAA 1334 Query 52199 GCCTTTCTGCGGTTTCTGCAGCGCCGCCCAGGGATCGTGAATCGTCACCTTAAAGTCCGA 52258 ||||| || ||||| || | || ||||| |||||||| || | || || |||||| Sbjct 1333 TCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTC 1274 Query 52259 CCTGCCCACGCACGACCGTTGCAACGCTTCGAAACTGTTGTCGATCGGTTTCAGGCTGTC 52318 | ||| || || || || | |||| ||||||| |||||| ||| | || || Sbjct 1273 ACGGCCGCTACAGGATCGCTGTAGTGCTTGGAAACTGCCTTCGATCTCTTTTAAACTATC 1214 Query 52319 GTTGATGCCGTCGCCTCCGCACATGGGAATGAAGCCGTACAGCAGATGCGACAGGTTCGG 52378 ||||||||||| || ||||| || ||||| |||||||| |||| ||| | || || || Sbjct 1213 ATTGATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTAGAGCAAATGAGTAAGATTAGG 1154 Query 52379 CAACGGCACCAGATCTACGGGAAAGTTGCGCAAGTAAACGCCCCATTCGACAAAGTAGGC 52438 | || | |||| ||||| || || | || || |||||||| || |||||||| Sbjct 1153 TATAGGTATACGATCCACGGGGAATTTCCTAGGATAGACACCCCATTCTACGAAGTAGGC 1094 >seq45806 Length=6479 Score = 113 bits (124), Expect = 5e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 38443 ACTGGCCCAAGAGCATGAAGCAGACGCCGCAACAGTTGGCCGAGGCCGGCTTCTACTATT 38502 ||||||| || |||||||||| ||| | | | ||||| || || |||| ||| Sbjct 5136 ACTGGCCTCGCAGTATGAAGCAGAAGCCTGAGGAACTCGCCGAAGCGGGATTCTTCTACA 5195 Query 38503 CGGGCACCGGAGACCAGGTCAAATGTTTCTTTTGCGGCGGCGGCCTTAAGGACTGGGAGC 38562 | ||| || ||| | || || |||| || | |||||| || |||||||||||| Sbjct 5196 CCGGCCAGGGTGACAAAACTAAGTGCTTCTACTGTGACGGCGGACTCAAGGACTGGGAGA 5255 Query 38563 CTGCGGACGATCCGTGGGCGCAGCACGCGCGCTGGTTCGACAGGTGCGCTTACGTGCTCA 38622 | |||| ||||||| |||||||||||||||||||||| ||||||| ||||||| Sbjct 5256 ACGACGACGTGCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGGTGCGCCTACGTGCAGC 5315 Query 38623 CCGTCAAAGGCGCCGACTACGTTCA 38647 ||||||||| || ||||| || Sbjct 5316 TGGTCAAAGGCCGAGAGTACGTCCA 5340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 536006424415440