Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq45806 134 1e-26 seq31223 131 1e-25 seq53127 114 1e-20 seq44559 104 2e-17 seq207359 100 2e-16 >seq45806 Length=6479 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 105462 GATTGGCCACTTAGTTTAAAACAAAGGCCAGAGCAATTGGCCGAAGCCGGTTTTTACTAC 105521 || ||||| | ||| | || || | ||| ||| || | |||||||| || || | |||| Sbjct 5135 GACTGGCCTCGCAGTATGAAGCAGAAGCCTGAGGAACTCGCCGAAGCGGGATTCTTCTAC 5194 Query 105522 ACCGGCAAAGGTGATAAAGTCAAATGTTTTTATTGCGACGGCGGCCTTAAGGATTGGGCA 105581 |||||| | ||||| ||| || || || || || |||||||| || ||||| |||| Sbjct 5195 ACCGGCCAGGGTGACAAAACTAAGTGCTTCTACTGTGACGGCGGACTCAAGGACTGGGAG 5254 Query 105582 AACGCCGACGAACCGTGGGAGGAACATGCACGTTGGTTTGATCGCTGTTCGTTCGTAAAA 105641 |||| ||||| ||||||||| | || || || ||||| || || || | | ||| | Sbjct 5255 AACGACGACGTGCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGGTGCGCCTACGTGCAG 5314 Query 105642 CTGGTCAAAGGACACGACTACGTGCAGCGGGTGATTAGCGAAGCATGCG 105690 ||||||||||| | || ||||| ||| |||||| | ||||| |||| Sbjct 5315 CTGGTCAAAGGCCGAGAGTACGTCCAGAAGGTGATCACGGAAGCGTGCG 5363 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 105162 AACGGGTTCTACTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTCTGCAAAGTGGAA 105221 || || ||||| ||| |||| |||| || ||||| ||||||||||| || ||||| ||| Sbjct 4832 AATGGCTTCTATTATCTGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAA 4891 Query 105222 ATAATGCGCTGGTTGGAGGGCGACGACCCGGCCGTAGATCATAAACGATGGGCGCCACAG 105281 || ||| ||| | | ||||||||| || ||| || || | || |||||||| ||| Sbjct 4892 ATTATGAAATGGGTTGCGGGCGACGATCCCGCCAAGGACCACCAGCGCTGGGCGCCTCAG 4951 Query 105282 TGCCCGTTTTTGCG 105295 ||||| || ||||| Sbjct 4952 TGCCCTTTCTTGCG 4965 >seq31223 Length=3647 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 |||||||| || ||||| ||||| | || || ||||||||||| ||||| ||||| Sbjct 732 AAAATGCAGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAACCT 673 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 |||| || ||| | |||||| |||||| ||||| |||||| |||| ||| Sbjct 672 TCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAGAT 613 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 |||||| | | |||| || || || ||||||||||| ||| | | || ||| Sbjct 612 CAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACTCTTTCTGACTAT 553 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||||| |||||||||||||| || || || || |||||||| || ||||| Sbjct 552 AATATTCAAAAAGAATCTACTCTTCACTTGGTATTGCGTCTTCGTGGTGG 503 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| ||||| | || || ||||| ||||| | ||| ||| | Sbjct 273 ATGCAAATTTTTGTTAAAACACTCACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 214 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || ||| ||||| |||||||||||| |||| |||||| Sbjct 213 GACACAATTGAAAATGTGAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAA 154 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | ||||||| ||||||||| ||||| |||||| | || || | || ||||| Sbjct 153 CAACGTCTTATTTTTGCGGGCAAGCAATTAGAAGATGGTCGTACACTGTCTGACTATAAC 94 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || |||||||||||||| | || ||||| | ||| | | ||||| Sbjct 93 ATCCAAAAAGAATCTACTTTGCACTTAGTACTTCGTTTAAGAGGTGG 47 Score = 105 bits (116), Expect = 6e-18 Identities = 106/136 (78%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 |||||||| || ||||| |||||||| |||||||||| ||| || |||||| ||||| Sbjct 408 GACAAAGAGGGTATTCCCCCAGATCAACAGAGGCTTATTTTTGCTGGAAAACAACTGGAA 349 Query 111340 GATT--CTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGT 111397 ||| | | | ||| | ||||||||||| ||||| ||||| || ||||||||||| | Sbjct 348 GATGGCCGTACATTAT--CTGATTATAATATTCAAAAGGAATCGACCCTACATTTAGTAT 291 Query 111398 TGCGTCTGCGCGGTGG 111413 |||| || || || || Sbjct 290 TGCGGCTTCGTGGCGG 275 >seq53127 Length=7988 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| ||||| || || |||| |||||||| || || ||||| |||| | Sbjct 6053 AATGCAAATATTTGTAAAGACACTGACTGGCAAAACTATCACATTGGAAGTGGAAGCTTC 6112 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| | | | | || || ||||||| |||||||||||| |||| || || Sbjct 6113 TGATACAATAGAAAATGTTAAGGCAAAAATTCAAGACAAAGAAGGCATTCCTCCTGACCA 6172 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||| |||||||||| ||| || ||||| |||||||| || || | |||||||| Sbjct 6173 ACAGAGGCTTATTTTTGCAGGAAAACAGCTGGAAGATGGACGTACACTGTCAGATTATAA 6232 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| ||||| |||||||| | || || ||| |||| || | ||||| Sbjct 6233 TATTCAAAAGGAATCTACTTTGCACTTGGTGCTGCGCCTTAGGGGTGG 6280 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || || ||||| | || || |||||||| || ||||| |||| | Sbjct 5598 ATGCAAATCTTCGTAAAAACTTTAACTGGGAAAACCATCACATTGGAAGTGGAAGCTTCT 5657 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | | ||||| ||| ||| ||||| |||||| | || |||||| Sbjct 5658 GATACAATCGAAAACGTAAAGGCAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAA 5717 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| || |||| || || || |||||||||||| || || | || |||||| Sbjct 5718 CAAAGACTAATTTTCGCCGGAAAGCAATTGGAAGATGGGCGCACACTGTCAGACTATAAT 5777 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || |||||||| | || ||||| |||||||| | ||||| Sbjct 5778 ATCCAGAAGGAATCTACTTTGCACTTAGTTTTGCGTCTAAGGGGTGG 5824 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| ||||| |||| || ||||| || || ||||| |||| | Sbjct 6966 ATGCAAATTTTTGTGAAAACATTGACTGGGAAAACTATCACTTTGGAAGTGGAAGCTTCT 7025 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | | || || ||| ||| ||||| |||||| |||| || ||| Sbjct 7026 GATACAATAGAAAATGTTAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGACCAA 7085 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| || |||| || || || ||| |||||||| || || | || |||||| Sbjct 7086 CAAAGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGCACATTGTCAGACTATAAT 7145 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || || ||||| | |||||||| |||||||| | ||||| Sbjct 7146 ATCCAGAAGGAGTCTACTTTGCATTTAGTTTTGCGTCTAAGAGGTGG 7192 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||||||||| || || |||| || ||||| || || ||||| |||| | Sbjct 7193 AATGCAAATTTTTGTAAAGACACTGACTGGGAAAACTATCACTTTGGAAGTGGAAGCTTC 7252 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| | | | | || || ||| ||| || || |||||| |||| ||||| Sbjct 7253 TGATACAATAGAAAATGTTAAGGCAAAGATTCAAGATAAGGAAGGCATTCCTCCAGATCA 7312 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 |||||| || |||| || || || ||| |||||||| || || | || ||||| Sbjct 7313 ACAAAGACTGATTTTCGCTGGAAAGCAACTGGAAGATGGACGCACATTGTCGGACTATAA 7372 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| || || || ||||| | |||||||| |||||||| | ||||| Sbjct 7373 TATCCAGAAGGAGTCTACTTTGCATTTAGTTTTGCGTCTAAGAGGTGG 7420 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| ||||| || || |||| ||||| || || || ||||| || ||| Sbjct 6737 AATGCAAATATTTGTAAAGACACTGACTGGCAAGACTATCACACTGGAAGTTGAGCCCTC 6796 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || | | | | || || |||||| || || |||||| |||| || || Sbjct 6797 TGACACAATCGAAAATGTTAAGGCGAAAATTCAAGATAAGGAAGGCATTCCTCCAGACCA 6856 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATT--CTAAAACTATGGCCGATTAT 111363 |||||||||||||| ||| || || || | || ||| | | ||||| | || || Sbjct 6857 ACAAAGGCTTATTTTTGCTGGAAAGCAGCTTGAGGATGGACGTACACTAT--CTGACTAC 6914 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||||| || ||||||||||| |||||||||| | |||||| | ||||| Sbjct 6915 AATATTCAGAAAGAATCTACTTTACATTTAGTACTTCGTCTGAGAGGTGG 6964 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||||||||| || || || |||| ||||| || || || ||||| || || Sbjct 5825 AATGCAAATTTTCGTAAAGACACTGACTGGCAAGACTATCACTTTGGAAGTTGAGCCTTC 5884 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| | ||| | || ||| ||||||| || ||||| || ||||| ||||| Sbjct 5885 TGATACAATTGAAAATGTTAAAGCAAAAATTCAGGATAAAGAGGGAATTCCCCCAGATCA 5944 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTAT 111363 ||||| ||||||| ||| || || || | |||||| | | ||||| | ||||| Sbjct 5945 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTAT--CTGATTAC 6002 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || ||||||||||| | || |||| | || ||| | ||||| Sbjct 6003 AACATTCAGAAAGAATCTACTTTGCACCTAGTACTACGGCTGAGAGGTGG 6052 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||||||||| || ||| |||| || ||||| || || |||| |||| | Sbjct 7421 AATGCAAATTTTTGTAAAGACGCTGACTGGGAAAACTATCACTTTGGAGGTGGAAGCTTC 7480 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| | | | | || || ||| ||| || || |||||| |||| ||||| Sbjct 7481 TGATACAATAGAAAATGTTAAGGCAAAGATTCAAGATAAGGAAGGCATTCCTCCAGATCA 7540 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 |||||| || |||| || || || ||| |||||||| || || | || ||||| Sbjct 7541 ACAAAGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGGCGCACATTGTCAGACTATAA 7600 Query 111366 TATACAAAAAGAATCTACACTACA 111389 ||| || ||||||||||| || || Sbjct 7601 TATCCAGAAAGAATCTACCCTTCA 7624 >seq44559 Length=2984 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||||||||| |||| || || ||||||||| ||||| ||||| Sbjct 436 ATGCAAATATTTGTCAAAACATTGACTGGAAAGACCATTACCCTGGAAGTAGAACCATCT 495 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | | | | || ||| ||||| || || || ||| | ||| || ||| Sbjct 496 GACACAATCGAGAATGTCAAAGCTAAAATACAGGATAAGGAGGGCATCCCCCCAGACCAA 555 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | || |||| ||| || || |||||||||||| | ||| || | ||||| ||| Sbjct 556 CAGCGTCTCATTTTTGCTGGAAAGCAATTGGAAGATGGTCGCACTTTGTCTGATTACAAT 615 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || ||||| || || || || |||||| | ||||| || ||||| Sbjct 616 ATTCAGAAAGAGTCAACCCTGCACTTAGTGCTTCGTCTCCGTGGTGG 662 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 111211 ACCGGCAAAACCATTACCGTGGAAACGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAA 111270 || || || ||||||||| ||||| ||||||| ||| || ||| | |||||| Sbjct 4 ACTGGAAAGACCATTACCCTGGAAGTGGAACCCTCTGATACTATTGAAAATGTAAAAGCT 63 Query 111271 AAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAA 111330 ||||| |||||||| ||| | || ||||| || | ||||| | ||| || || Sbjct 64 AAAATCCAAGACAAAGAGGGCATCCCACCTGATCAGCAGCGTCTTATCTTTGCTGGTAAG 123 Query 111331 CAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACAT 111390 |||||||||||| | || || | || || || || ||||| || ||||| || ||| Sbjct 124 CAATTGGAAGATGGTCGCACCCTGTCTGACTACAACATCCAAAAGGAGTCTACCCTTCAT 183 Query 111391 TTAGTGTTGCGTCTGCGCGGTGG 111413 |||| |||||||||| ||||| Sbjct 184 CTAGTACTGCGTCTGCGAGGTGG 206 >seq207359 Length=487 Score = 100 bits (110), Expect = 2e-16 Identities = 105/136 (77%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 |||||||| || ||||| |||||||| ||||| |||| || || |||||| ||||| Sbjct 80 GACAAAGAGGGTATTCCCCCAGATCAACAGAGGCTGATTTTCGCTGGAAAACAACTGGAA 139 Query 111340 GATT--CTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGT 111397 ||| | | | ||| | ||||||||||| ||||| |||||||| ||||||||||| | Sbjct 140 GATGGCCGTACATTAT--CTGATTATAATATTCAAAAGGAATCTACCCTACATTTAGTAT 197 Query 111398 TGCGTCTGCGCGGTGG 111413 |||| || || || || Sbjct 198 TGCGGCTTCGTGGCGG 213 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| ||||| | || || ||||| ||||| | ||| ||| | Sbjct 215 ATGCAAATCTTTGTTAAAACACTCACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 274 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || ||| ||||| |||||||||||| |||| |||||| Sbjct 275 GACACAATTGAAAATGTGAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAA 334 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | ||||||| ||||||||| ||||| |||||| | || || | || || || Sbjct 335 CAACGTCTTATTTTTGCGGGCAAGCAATTAGAAGATGGTCGTACACTGTCTGACTACAAC 394 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || |||||||||||||| | || ||||| | ||| | | ||||| Sbjct 395 ATCCAAAAAGAATCTACTTTGCACTTAGTACTTCGTTTAAGAGGTGG 441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421814909738800