Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq74 152 4e-32 seq53127 89.7 4e-13 seq18229 87.8 1e-12 seq44559 86.0 5e-12 >seq74 Length=8553 Score = 152 bits (168), Expect = 4e-32 Identities = 94/98 (96%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 7381 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 7440 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 |||||||||||||||||||||||| ||||||| ||||| Sbjct 7441 AAAACTGATATATTGAGCCATTCGCGGTATCGCCTTAA 7478 Score = 152 bits (168), Expect = 4e-32 Identities = 94/98 (96%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 7381 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 7440 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 |||||||||||||||||||||||| ||||||| ||||| Sbjct 7441 AAAACTGATATATTGAGCCATTCGCGGTATCGCCTTAA 7478 Score = 82.4 bits (90), Expect = 6e-11 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Plus Query 114145 TCCGTCGATTGGTTT-GATCTAATAAAAGCACTCATCCCATCACTGGTTAGA 114195 ||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 7319 TCCGTCGATTGGTTTTGATCTAATAAAAGCACTCATCCCATCACTGGTCAGA 7370 Score = 82.4 bits (90), Expect = 6e-11 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Plus Query 115342 TCCGTCGATTGGTTT-GATCTAATAAAAGCACTCATCCCATCACTGGTTAGA 115392 ||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 7319 TCCGTCGATTGGTTTTGATCTAATAAAAGCACTCATCCCATCACTGGTCAGA 7370 >seq53127 Length=7988 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||||||||||||| |||||||| | || ||||||||||| ||||| || | Sbjct 6736 CCACCTCTCAGCCGCAGTACCAGATGCAAAGTAGATTCCTTCTGAATATTGTAGTCAGAT 6677 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | || | || || | ||||| || ||||| || || | |||||||| || Sbjct 6676 AGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGA 6617 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGATTCG 34077 | || |||||| ||| |||||| ||||| | | || |||||| || ||| Sbjct 6616 ATGCCCTCTTTATCCTGAATTTTCGCCTTAA---CATTTTCAATTGTATCAGAAGCTTCC 6560 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||| | || || ||||| || || ||||| || ||||| ||||||||| Sbjct 6559 ACTTCCAATGTGATAGTTTTGCCAGTCAGTGTCTTTACAAATATTTGCATT 6509 >seq18229 Length=13825 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 37827 ACGCACGATCTCTTGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCAT 37886 || |||||| ||| |||||| | |||||||| || || ||| ||||| ||||||||| Sbjct 3320 ACACACGATGACTTATGGAACTCAGCTCAAATACAACTGGTGAAAGAGGGCAAGATGCAT 3261 Query 37887 CAGTATATGCGCATGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGAC- 37945 | | |||||||| ||||||||||| ||||| |||||| | | | || | || Sbjct 3260 GGTTTCCTACGCATGTACTGGTGCAAGAAGATTTTAGAATGGACCCA-GTCGCCCGAACA 3202 Query 37946 CGCGCTCAACTACGCCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAA 38005 || | || | || ||||| | |||||| | ||||| | ||||| | ||||| || Sbjct 3201 GGCTTTGAAGTTTGCTATTTACTTGAATGATCATTACAGTGTTGACGGCAGAGATCCTAA 3142 Query 38006 CGGTTACGTCGG 38017 ||||| || || Sbjct 3141 TGGTTATGTTGG 3130 >seq44559 Length=2984 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| |||| ||| ||||| || |||||||| || |||||| || |||||||| || | Sbjct 207 ACCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGA 148 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || | || ||||||||||| || ||||| || || ||||||||||| || Sbjct 147 CAGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGG 88 Query 34020 CACGCTCTCTTTGTC 34034 | || ||||||||| Sbjct 87 GATGCCCTCTTTGTC 73 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395912538806428