Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq21383 203 3e-47 seq31223 116 4e-21 seq88586 107 2e-18 seq44559 102 8e-17 seq45806 96.9 3e-15 seq207359 95.1 1e-14 seq53127 93.3 4e-14 >seq21383 Length=8822 Score = 203 bits (224), Expect = 3e-47 Identities = 460/679 (68%), Gaps = 16/679 (2%) Strand=Plus/Plus Query 27833 AAAGGCGGCAAGTTCGACATGACAGTGAAGCTGTGCAACGTCGACGGCTGTTCGACAAGT 27892 ||||| || | | | | ||||||||| |||| ||||| | |||||||| ||||| Sbjct 920 AAAGGTGGAAGATACCAAATGACAGTGGAGCTTTGCAATGAAGACGGCTGCAGTTCAAGT 979 Query 27893 -AGCGCGGTCAAAGTGATCGTCGCCGACACCGACGGTTCTCATCTCGCGCCGCTAGTATA 27951 | | | ||| || |||| ||||| ||||| || |||| | | || |||| ||| Sbjct 980 GATCCCACCGAAATTG-TCGTGGCCGATACCGATGGAAGTCATTTACCTCCTCTAGAATA 1038 Query 27952 CGATTTCCTCGAAAACAACAAGCGCTTTGAT-AAACATCCCGAGAAAATTGTGGCCGCCT 28010 | || ||||| || |||| || | ||||||| || ||| |||||| |||| Sbjct 1039 CACATTGGGAGAAAAAAATAAGCCGTTCAAGCAAACATCTGGA-AAAGTTGTGGGTGCCT 1097 Query 28011 ATTTCGTCGAGTGGGGCGTGTATCTGCGGCAGTTTCCCGTCGACAAAGTGCCCGCGCCCA 28070 | ||||| || ||||| || |||| || | || ||||| || | || || | Sbjct 1098 ACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATACCTATACCTA 1157 Query 28071 ACCTGTCGCACTTGCTGTACGGTTTCGTGCCGATATGCGGCGGCGACGGCATAAACGACG 28130 | || | || ||||| ||||| || | || || |||||||| |||||||| || || Sbjct 1158 ATCTTACTCATTTGCTCTACGGCTTTATTCCAATTTGCGGCGGTGACGGCATCAATGATA 1217 Query 28131 CCCTCAAGACCGTTCCC-GGCAGTTTCGAGGCGCTGCAGCGCTCGTGCGCCGGGCGCGCC 28189 | || | | || ||||||||| | || || ||||| || || ||| || | Sbjct 1218 GTTTAAA-AGAGATCGAAGGCAGTTTCCAAGCACTACAGCGATCCTGTAGCGGCCGTGAG 1276 Query 28190 GACTTCAAGGTGACGATCCACGATCCCTGGGCCGCCATTCAGAAGCCGCAAAAGGGCGTC 28249 |||||||| || | ||||||||||| ||||| || | || || || ||||| || | Sbjct 1277 GACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGATTG 1336 Query 28250 TCTACGTGGAACGAGCCGTACAAAGGCAACTTTGGGCAATTGATGAGCGTCAAATTAGCC 28309 ||| | ||||||||||| ||||||||||||||||| ||||| ||| | ||| |||| Sbjct 1337 TCTTCATGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACAAGCC 1396 Query 28310 AATCCGCACTTGAAGGTGCTGGCGTCGATCGGCGGCTGGACGCTGTCGGACCCATTC--- 28366 || | |||||| | || | || || || || |||||||| | || || ||| Sbjct 1397 CGCCCTGAATTGAAGATTCTTCCATCTATTGGTGGGTGGACGCTTGCCGATCCTTTCTTC 1456 Query 28367 -TTTCACATGCACGACGCGACCGTGCGCCAAACG-TTCATCGATTCCGTCGTGGACTTTC 28424 ||| | || || | | | | | | ||| || | | || || ||| |||| Sbjct 1457 TTTTTAGTTG-ACAAATCTA-AGAG---AACACGATTTGTGCAGTCAGTAAAGGAGTTTC 1511 Query 28425 TGCTGACCTGGAAGTTCTTCGACGGCGTCGACATCGATTGGGAGTTTCCGGGCGGCAAAG 28484 | || || ||||| |||||||| || || || |||||||||||||| || || ||||||| Sbjct 1512 TTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAAAG 1571 Query 28485 GAGCCAATCCCGATGTCGG 28503 | || || || || |||| Sbjct 1572 GTGCTAACCCTGACCTCGG 1590 >seq31223 Length=3647 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 ||||| || | ||||| |||||||||| | | || ||||||||||| || || || | | Sbjct 275 CCGCCACGAAGCCGCAATACTAAATGTAGGGTCGATTCCTTTTGAATATTATAATCAGAT 334 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| || || |||||||| || | | | || || | |||||| || || || Sbjct 335 AAT-GTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGG 393 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| |||||||| ||| ||| || | | ||| | ||||||| || ||| || Sbjct 394 AATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTCTAC 453 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| || || ||||| || ||||| |||||||| Sbjct 454 CTCTAAAGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 501 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||||| | ||||| || | | || || ||||| ||||| ||||| | Sbjct 47 CCACCTCTTAAACGAAGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTATAGTCAGAC 106 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | ||| || || | | | || ||||| ||||| || ||||| Sbjct 107 AGTGTACGACCATCTTCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCTGGAGGA 166 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| |||||| ||| | | ||| | ||||| | | || || Sbjct 167 ATGCCTTCTTTGTCTTGGATTTTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCAACT 226 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||| || ||||| |||||||| ||||| Sbjct 227 TCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAACAAAAATTTGCAT 273 >seq88586 Length=4530 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||||||||||||||| || ||||| || || ||||||||||| | | Sbjct 2212 GATTCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCA 2271 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | ||| || ||||| || || |||||||| || || |||||| ||| | Sbjct 2272 AAGATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATTTTAGCTTTAACA 2331 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || || | | ||||||||||| || | |||||||| || || || || Sbjct 2332 TTTTCTATAGTATCAGAGGCCTCCACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTG 2391 Query 138601 ACAAAAATCTGCAT 138614 || ||||| ||||| Sbjct 2392 ACGAAAATTTGCAT 2405 >seq44559 Length=2984 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| ||||| |||||||| | | | ||||| ||||| ||||||||||| | Sbjct 434 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGAC 375 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || || || | | |||| ||||| ||||| || || || Sbjct 374 AGGGTGCGACCATCTTCTAGCTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGGGGA 315 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| ||||| || ||| | || | |||| | ||| | |||||| | | |||||| Sbjct 314 ATACCCTCTTTATC-TTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGATGGCTCCAC 256 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || || || || || ||||| || ||||| Sbjct 255 CTCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 208 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | |||||||| | | || || ||||| ||||| ||||| Sbjct 1346 CCACCACGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGAT 1287 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| | |||||||| | | |||| |||||||||||||| || || Sbjct 1286 AGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGA 1227 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | ||| | ||||||| | ||||||| Sbjct 1226 ATGCCCTCCTTGTCTTGGATCTTAGCCTTAACATTTTCGATAGTGTCGGATGGCTCCACC 1167 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| ||||| || ||||| |||||||| Sbjct 1166 TCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACAAAGATCTGCAT 1120 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| ||||| |||| ||| | | | ||||||||||| ||||||||||| | Sbjct 206 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 147 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | ||| ||||| | | |||| |||||||| || || || || Sbjct 146 AGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 87 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 || || |||||||| |||||| ||||| Sbjct 86 ATGCCCTCTTTGTCTTGGATTTTAGCTTTTA 56 >seq45806 Length=6479 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/120 (79%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 124741 GGCTTCTACTACATGGGCGTCGGCGACGAAGTGCGTTGCGCTTTCTGCAAAGTCGAAATT 124800 |||||||| || ||||| |||||| ||||| || ||||| || || ||||| |||||| Sbjct 4835 GGCTTCTATTATCTGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAAATT 4894 Query 124801 ATGCGATGGCAGCCCGGCGACGAT-CCGCTAACGGACCACAAACGATGGGCGCCTCAGTG 124859 ||| |||| | ||||||||| |||| || ||||||| | || |||||||||||||| Sbjct 4895 ATGAAATGGGTTGCGGGCGACGATCCCGCCAA-GGACCACCAGCGCTGGGCGCCTCAGTG 4953 >seq207359 Length=487 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||||| | ||||| || | | || || ||||| ||||||||||| | Sbjct 441 CCACCTCTTAAACGAAGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAC 382 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | ||| || || | | | || ||||| ||||| |||||||| Sbjct 381 AGTGTACGACCATCTTCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGA 322 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| |||||| ||| | | ||| | ||||| | | || || Sbjct 321 ATGCCTTCTTTGTCTTGGATTTTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCAACT 262 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||| || ||||| ||||| || ||||| Sbjct 261 TCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAACAAAGATTTGCAT 215 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 ||||| || | ||||| |||||||||| | | || ||||||||||| || || || | | Sbjct 213 CCGCCACGAAGCCGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGAT 154 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| || || |||||||| || | | || || | |||||| || || || Sbjct 153 AAT-GTACGGCCATCTTCCAGTTGTTTTCCAGCGAAAATCAGCCTCTGTTGATCTGGGGG 95 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| |||||||| ||| ||| || | | ||| | ||||||| || || || Sbjct 94 AATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGTTCTAC 35 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| | || | ||||| || || ||||| || Sbjct 34 CTCAAGAGTAATGGTTTTTCCTGTAAGAGTCTT 2 >seq53127 Length=7988 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||||||||| || || || || ||||| || || || ||||| || | | Sbjct 6247 GATTCCTTTTGAATATTATAATCTGACAGTGTACGTCCATCTTCCAGCTGTTTTCCTGCA 6188 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || || | ||||||||| ||||| || ||||||||||| ||| |||||| |||| Sbjct 6187 AAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTC-TTGAATTTTTGCCTTAAC 6129 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | || || | | ||||| || | || | ||||| |||||||| || || Sbjct 6128 ATTTTCTATTGTATCAGAAGCTTCCACTTCCAATGTGATAGTTTTGCCAGTCAGTGTCTT 6069 Query 138600 TACAAAAATCTGCAT 138614 |||||| || ||||| Sbjct 6068 TACAAATATTTGCAT 6054 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||||||||||||||| | | |||||||| || || || ||||| | Sbjct 7192 CCACCTCTTAGACGCAAAACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCTGAC 7133 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || ||||| || |||| | || || | |||||||| ||||| Sbjct 7132 AATGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGGTCTGGAGGA 7073 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| | |||| |||| | ||| | || || | | ||||| Sbjct 7072 ATGCCTTCCTTGTC-TTGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCAC 7014 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||||| ||||| |||||||| ||||| Sbjct 7013 TTCCAAAGTGATAGTTTTCCCAGTCAATGTTTTCACAAAAATTTGCAT 6966 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||||||||||||||| | | |||||||| || || || ||||| | Sbjct 7420 CCACCTCTTAGACGCAAAACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCCGAC 7361 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || ||||| || || | | || || | ||||| || ||||| Sbjct 7360 AATGTGCGTCCATCTTCCAGTTGCTTTCCAGCGAAAATCAGTCTTTGTTGATCTGGAGGA 7301 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || ||| | |||| |||| | ||| | || || | | ||||| Sbjct 7300 ATGCCTTCCTTATC-TTGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCAC 7242 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| |||||||| || ||||||||||| ||||| Sbjct 7241 TTCCAAAGTGATAGTTTTCCCAGTCAGTGTCTTTACAAAAATTTGCAT 7194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494788413826080