Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq88586 102 5e-17 seq31223 102 5e-17 seq44559 96.9 2e-15 seq53127 89.7 3e-13 >seq88586 Length=4530 Score = 102 bits (112), Expect = 5e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 34775 CAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCA 34833 |||| || | |||| ||| || |||||||| ||||| || | | ||| |||| || | Sbjct 2198 CAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTCTA 2257 Query 34834 GCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAA 34893 | ||||| || ||||| || | |||||||||||| | || | || ||||| || | Sbjct 2258 GTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGA 2317 Query 34894 TCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTC 34953 | || ||| || | |||| | ||| |||||| || |||| ||| |||||||| | Sbjct 2318 TTTTAGCTTTAACATTTTCTATAGTATCAGAGGCCTCCACCTCGAGGGTAATGGTTTTAC 2377 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || ||||| || || || ||||| Sbjct 2378 CCGTAAGGGTCTTGACGAAAATTTGCAT 2405 >seq31223 Length=3647 Score = 102 bits (112), Expect = 5e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||||| || |||||| ||||| |||||||| ||||| | ||| | || Sbjct 517 CAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAAAGAGTGCGTCCGTC 576 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||| || ||||| || || || | ||||| || ||| | || | || |||||||| Sbjct 577 TTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTC 636 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||| || ||| || | | || | || | ||||| || | || ||||| Sbjct 637 TTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAATGGT 696 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||| ||||| || || ||||||||||||||||| || Sbjct 697 TTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 732 >seq44559 Length=2984 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829 || |||||||| | ||| ||||||||||| || ||||| || || | || |||| Sbjct 1103 AATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAGAGAGTACGGCCATCC 1044 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 |||||||| || || || || || || ||||| || ||| | || | ||||| ||||| Sbjct 1043 TCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGAATACCCTCTTTGTCT 984 Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| ||| || | | || | || || ||||| || | || || ||| Sbjct 983 TGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACTTCTAATGTGATAGTT 924 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || || ||||| ||||||||||||||| Sbjct 923 TTCCCTGTCAGTGTCTTTACAAAGATCTGCATA 891 Score = 96.9 bits (106), Expect = 2e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||| || |||||||||||||| || | || |||| || | |||||| || ||||| Sbjct 1311 TTCTTTTTGGATGTTATAGTCCGATAGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAA 1252 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || || |||||| | || | ||||||||||| ||||| || || Sbjct 1251 GATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTAACATT 1192 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | || | ||| || || | || ||||| || || || |||||||| || Sbjct 1191 TTCGATAGTGTCGGATGGCTCCACCTCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAAC 1132 Query 34970 AAAGATCTGCATA 34982 ||||||||||||| Sbjct 1131 AAAGATCTGCATA 1119 >seq53127 Length=7988 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||||||||| || ||||| || || | ||| |||| || ||||| ||||| ||||| Sbjct 6929 TTCTTTCTGAATATTGTAGTCAGATAGTGTACGTCCATCCTCAAGCTGCTTTCCAGCAAA 6870 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||| |||||| | || | || ||||| || ||| ||| || || Sbjct 6869 AATAAGCCTTTGTTGGTCTGGAGGAATGCCTTCCTTATCTTGAATTTTCGCCTTAACATT 6810 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | ||| || |||||| || | || || || || || || || ||||| || Sbjct 6809 TTCGATTGTGTCAGAGGGCTCAACTTCCAGTGTGATAGTCTTGCCAGTCAGTGTCTTTAC 6750 Query 34970 AAAGATCTGCAT 34981 ||| || ||||| Sbjct 6749 AAATATTTGCAT 6738 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||||||||| || || || || | ||| |||| || ||||| ||||| ||||| Sbjct 6017 TTCTTTCTGAATGTTGTAATCAGATAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAA 5958 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || |||| |||||| ||| | || | ||||| || || ||| || ||| || Sbjct 5957 AATAAGTCTTTGCTGATCTGGGGGAATTCCCTCTTTATCCTGAATTTTTGCTTTAACATT 5898 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | ||| | |||||| || | || || || || || || || ||||| || Sbjct 5897 TTCAATTGTATCAGAAGGCTCAACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTAC 5838 Query 34970 AAAGATCTGCAT 34981 || || ||||| Sbjct 5837 GAAAATTTGCAT 5826 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| ||||| | | || |||||||| | || ||| || ||||| ||||| || | Sbjct 6282 TTCCACCCCTAAGGCGCAGCACCAAGTGCAAAGTAGATTCCTTTTGAATATTATAATCTG 6223 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || | ||| |||| |||||||||||||| ||||| || || | || ||||| | | Sbjct 6222 ACAGTGTACGTCCATCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAG 6163 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || ||||| ||| || || || | |||| | ||| || || | Sbjct 6162 GAATGCCTTCTTTGTCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCA 6103 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || || ||||| || || || ||||| ||||| || ||||| Sbjct 6102 CTTCCAATGTGATAGTTTTGCCAGTCAGTGTCTTTACAAATATTTGCAT 6054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323693486862192