Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq24004 547 7e-151 seq32346 136 4e-27 seq38285 107 2e-18 >seq24004 Length=11461 Score = 547 bits (606), Expect = 7e-151 Identities = 1197/1789 (67%), Gaps = 27/1789 (2%) Strand=Plus/Minus Query 46964 TAATTTGTCTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATA 47023 || ||| |||| || |||||||||| ||| | ||| |||| |||||| ||||| || Sbjct 10015 TATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGTA 9956 Query 47024 ATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGA 47083 ||||| || || ||||| || | |||| | | |||||| || || | ||| Sbjct 9955 GTACATTCCTGTTTTTAATCCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTCC 9896 Query 47084 ATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCT 47143 ||| |||||| | || ||| || |||| ||||||||| || || ||||| || ||||| Sbjct 9895 ATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTCCTCT 9836 Query 47144 ATCAGCTGCCATATCTAAAATAACCCTTT--GTGGTATCTCCCATACTGTTTTATAAATT 47201 |||||||||||| | || | ||| ||| ||||||||||| ||||| || | Sbjct 9835 ATCAGCTGCCATCTGTATGG--ATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAA 9778 Query 47202 TGTTTAATGTCTTCTGGGAGATT---AGTATTTTGAATAGATCCTCCgttttctataatt 47258 | | | || |||| || | || | | | ||| |||||||| ||| | |||||| Sbjct 9777 TCTCTTATTTCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATA 9718 Query 47259 ttgtttttta-at--tcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGA 47315 ||||| | || |||| || || || ||| || | | ||||||| Sbjct 9717 AGATTTTTCATATCGTCATCCCACAAATCAGCCCG---AGTCAAATCAGTCAGAAGATGA 9661 Query 47316 GGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATAT 47375 | || || | ||||||||||||||| ||||| | || ||||| |||| | Sbjct 9660 TGGTTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAG 9601 Query 47376 GGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCA 47435 ||||| | ||||||| | || |||| |||||| ||||| || || || ||||| | || Sbjct 9600 GGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCT 9541 Query 47436 ACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCC 47495 | |||| ||| | | |||| |||| ||||| ||| ||| Sbjct 9540 ATCAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCC 9481 Query 47496 CAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGA 47555 ||||| |||| ||| | ||| | |||||| || || || |||| ||| ||| Sbjct 9480 CAAAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGCTGGA 9421 Query 47556 GAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAAT 47615 || | |||||| | || | ||| | | || ||| | ||||||||| ||||| ||| Sbjct 9420 CTCCCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAAT 9361 Query 47616 GCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTT-CTGATGATTC 47674 |||| |||||| |||||||||||||||| | || ||| |||||| || | ||| Sbjct 9360 GCACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACT-TTC 9302 Query 47675 AAAAGGATANNNNNNNNNNNNNAAT-GTATCTGCCAATCCTTGAACACCAATACCAATTG 47733 ||| ||| || | |||||||| || ||||||||||||||||| | Sbjct 9301 GTAAG-ATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAG 9243 Query 47734 GTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAA 47793 ||||||| | |||| ||| | ||||| || | ||||| || | ||| |||| Sbjct 9242 GTCTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACATCAATAA 9183 Query 47794 TTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACT 47853 ||| |||| | |||||| ||||||| ||||||| ||| Sbjct 9182 CTTTGTTTAAATTTTGAGTTACAATCTTTGTGATTTCTTTTAATTTTTTAAAATTAAATC 9123 Query 47854 TGTTATTTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT 47913 |||||||| ||||||| | ||||||||||| || || || || || || || || |||| Sbjct 9122 TGTTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCAT 9063 Query 47914 TTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAAT 47973 | ||| ||||| | | |||| || ||||| | |||||| ||||| || | || Sbjct 9062 CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGAT 9003 Query 47974 TTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTT 48033 ||| |||||| | ||||||| || ||||| || | ||| | ||||| ||||| | Sbjct 9002 TTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCAGTCT 8943 Query 48034 CTATCTGAGATTCAATGATAGATTTCCAAACAGTCCT-AGCCTTTATAACAGCTCTAGCT 48092 | | || | ||| || || || ||||| | | || | ||| | | | || | Sbjct 8942 CCACTTGGGCTTCTATAATTGACTTCCATA-ACTCTTGAGCTCTGACTTGTTTTATAAAT 8884 Query 48093 TTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCT 48152 || || | ||| ||||| | ||||| | |||||||| || ||| | | | | Sbjct 8883 CGTTTTTCTTCTTCATATTTGGCATATAGTTCGTCAAATTCCTCTCCAAAGCAGTCAGCG 8824 Query 48153 AACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTC 48212 | |||||||| |||| ||||||||| | |||| | ||||| |||| |||||| || Sbjct 8823 AGGCCAGGACAATCATGAGGACACATGAGACTCCAAACTTCATCCTTTTCTACTCTTTTC 8764 Query 48213 ATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTG 48272 ||||| | |||||||||||| | ||| ||| | || |||| ||| | |||||| || Sbjct 8763 ATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTA 8704 Query 48273 CCACTATTCCT-TTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATA 48331 || | ||| | ||||| | |||||| || | |||||| |||||||| || |||||||| Sbjct 8703 CCTGTGTTCTTCTTTAAATCCAAGAAT-TCAAATATATCCGCATGCCAAGGCTCTAAATA 8645 Query 48332 TATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTT 48391 ||||| | | | || || ||||| || || |||||||||| |||||||||||||||||| Sbjct 8644 AATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGTT 8585 Query 48392 ATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACT 48451 ||| ||||| |||||||| || | ||||||||| | ||||| || || | || ||| Sbjct 8584 ATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAGCTATGTAAGA 8525 Query 48452 TCCACTAGCTCTTAT---ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATAT 48508 || |||||| || || || || || |||||| ||||| || |||||| || Sbjct 8524 ACCCTGAGCTCTGATGCAATGTGTA--TGTAA-ACCTATGCCACCAGCAGATTTAGAAAT 8468 Query 48509 TAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAA 48568 || ||||| |||| | |||||| | || ||||| || ||||| ||| ||||| || Sbjct 8467 TAATGCACATTGTTTTAAAGTATCAAAGATACCTTCAATGCTATCGTCTTTCATAGCTAT 8408 Query 48569 TAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGC 48628 || ||||| || | || || | || ||| || | ||| || ||| Sbjct 8407 AAGGAAACAGGAGGAAAGCTGTGGCCGCGGTGTGGCTGCGGAGAACAGTGTAGGGCTTGC 8348 Query 48629 ATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCA 48688 ||| |||| |||||||||| | || ||||| |||| || || ||| || || Sbjct 8347 ATGTGTAAAATATTTCTCTGACATCATATTATAAGTTTTGATTGCACTATCAATGTCTTC 8288 Query 48689 TTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCA 48737 ||| || ||||| || || | ||| | ||| | |||||| |||||| Sbjct 8287 ACCATGAATGCCTATGGAGACTCTCATAAGCATGTGTTGAGGCCTTTCA 8239 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 48744 TTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTAT 48803 || || ||||| ||||| | ||||||| ||||||| ||||| |||||||||||||||||| Sbjct 7900 TTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTAT 7841 Query 48804 GAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTTT 48853 ||| || |||||| || ||| | || | || | | ||||| | ||| Sbjct 7840 TTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 7791 >seq32346 Length=5591 Score = 136 bits (150), Expect = 4e-27 Identities = 157/210 (75%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 19233 ATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAA 19292 ||||| || || |||||| |||||| |||||||||| |||||| ||||| || ||||| Sbjct 3814 ATATGTGTCAATTAATAAAGAGTACATCTCTGAATGAACATTTTCCATAGCAATTTGAAA 3873 Query 19293 TCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATT 19352 || || || || || ||||| || | || || || |||| | || ||||| || Sbjct 3874 ACCATAGAAGCACCTGGCTTCAGTCACTTGAACCTCTTGTGAAAAACGCTCCACCAAGTT 3933 Query 19353 TTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTT 19412 |||||||| || |||||| ||| ||||| |||||||| ||||| || ||||||||||| Sbjct 3934 CTCATTAACAATACCATCAGAAGCCGCAAAGAATGCTAAGACATGCTTGATAAAATGTTT 3993 Query 19413 TTC---ATCTGAGGTTAATGTATTCCAATC 19439 || |||| ||||||| | |||||| Sbjct 3994 CTCACAATCT---TTTAATGTCTCCCAATC 4020 Score = 116 bits (128), Expect = 4e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| || ||| || | ||||||| || || || || |||||||| |||| ||||| Sbjct 2979 CCTCATCCCTAGAAATAAGTTCATTACTGAAAGTCAATCCGGGCATCAGACCTCGTTTTT 3038 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | ||||| ||||| |||||||| || || || ||||| || || ||||||||||||| Sbjct 3039 TCAACCAAAATATTGAAGCAAAGCTGCCTGAGAAAAATATTCCCTCAACTGCTGCAAAAG 3098 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 ||| || | ||||||| | |||| || | ||||| | | ||||| || | Sbjct 3099 CAATTATACGTTCTCCAAATGTAGCTGTCTTGCTGCCGATCCACTGTAACGCCCAGTCTG 3158 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 ||||||| || |||||||| | || || || | ||| |||| Sbjct 3159 CCTTCTTCTTAACACATGGTAGAGTTTCAATTGCATTGAATA 3200 Score = 102 bits (112), Expect = 9e-17 Identities = 85/103 (83%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501 ||||| ||| ||||| ||||||||||| | |||||||| || || || |||||||||| Sbjct 4151 TAATACCTTG-GATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTAT 4209 Query 19502 ACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 |||| | ||||||||| ||||||| || || ||||||||||| Sbjct 4210 ACATCTGCCATATATCTGGATATTGGATTGGGAATATAACAAA 4252 >seq38285 Length=4996 Score = 107 bits (118), Expect = 2e-18 Identities = 246/365 (67%), Gaps = 9/365 (2%) Strand=Plus/Plus Query 136634 ATGACTCC--TATTAACCCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATTTA 136691 |||||||| ||||| || ||||| || ||| | || |||| || || | || | | Sbjct 1967 ATGACTCCAGTATTA--CCGATGTTAGCTGAAGCTTGCAAATCAGTTGAAATGGCTATGA 2024 Query 136692 AAAAGTTTCCAAATGGAATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGTTC 136751 |||| | ||||||||| || || | || ||||||||||| |||||||| || || || | Sbjct 2025 AAAAATGTCCAAATGGCATGTTCTCTGAGATAAAATATGATGGAGAACGGGTTCAAGTCC 2084 Query 136752 ACAAGAATGGAAACCACTTTGCATTTTTTAGTAGAAACATGAAACCCGTAACAAAACATA 136811 | || || ||||| | || || |||| | | | ||||| |||| || | Sbjct 2085 ATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCACA 2144 Query 136812 AAGTTGATTATCTTAATGAGTATATACCTAAAGCCTTTAAAAATGTATCATCTCTT-ATT 136870 ||||| | || |||| || ||| |||| ||||| ||| || | | || ||| ||| Sbjct 2145 AAGTTAGTCATTTTAAAGATTATTTACCCAAAGCATTTCCTAAAGGA-GATGACTTGATT 2203 Query 136871 TTAGATTCAGAAATAGTACTAGTAGATAAAAATAAT---AAACCATTACCATTTGGCAGT 136927 || ||| | ||| || | | || ||| |||| | |||||||| || || || | Sbjct 2204 TTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTCGGTACA 2263 Query 136928 TTGGGTATACATAAAAAGAAGGAATATAATGATTCATCACTATGTTTATTTGTATTTGAT 136987 || ||||| || ||| | |||| ||| ||| | | | || |||| | |||||||| Sbjct 2264 TTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGCTTATATATATTTGAT 2323 Query 136988 TGTTT 136992 || || Sbjct 2324 TGCTT 2328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560439238494960