Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_019719.1 Length=41528 Score E Sequences producing significant alignments: (Bits) Value seq237382 372 8e-99 seq237567 212 2e-50 seq237313 98.7 3e-16 >seq237382 Length=259 Score = 372 bits (412), Expect = 8e-99 Identities = 221/231 (96%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34457 ACCTTCAACTACACGGCTCACCTGTGGGATATCCGGTGGCTTAGAGAACGTGCGAGGAAA 34516 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 1 ACCTTCAACTACACGGCTCACCTGTGGGATATCCGGTGGCTAAGACGTCGTGCGAGGAAA 60 Query 34517 ACAAGGTGATTGACCCAAATCGAAGTTACGAACAAGAAAGCGTCGAGCGGGCTTTAACGT 34576 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 61 ACAAGGTGATTGACCAAAATCGAAGTTACGAACAAGAAAGCGTCGAGCGAGCTTTAACGT 120 Query 34577 GCGCTAACTGCGGTCAGAAGCTGCATGTGCTGGAAATTCACGTGTGTGAGCACTGCTGCG 34636 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 121 GCGCTAACTGCGGTCAGAAGCTGCATGTGCTGGAAGTTCACGTGTGTGAGCACTGCTGCG 180 Query 34637 CAGAACTGATGAGCGATCCGAATAGCTCAATGTACGAGGAAGAAGACGATG 34687 |||||||||||||||||||||||||||| ||| ||||||||||||| |||| Sbjct 181 CAGAACTGATGAGCGATCCGAATAGCTCGATGCACGAGGAAGAAGATGATG 231 >seq237567 Length=272 Score = 212 bits (234), Expect = 2e-50 Identities = 179/215 (83%), Gaps = 14/215 (7%) Strand=Plus/Plus Query 37766 TTTGCTCATGAATG-CGGTCACGAACAAACCCG-TTACAAATCAACCGTAACCCGGATTT 37823 ||||| | || || |||||||||||||| | | |||| || || | ||| || |||||| Sbjct 62 TTTGCCCGTGCATATCGGTCACGAACAAATCTGATTACTAAACA-CAGTAGCCTGGATTT 120 Query 37824 GTTC-------AAGCGACCATATCCATAATTCCTAATTTGAACAGATCCCCTTCT-GGGG 37875 |||| || ||||| ||| | ||||| || | || || |||||||| | |||| Sbjct 121 GTTCTATCAGTAATCGACCTTATTCCTAATT---AAATAGAGCAAATCCCCTTATTGGGG 177 Query 37876 GTAAGACATGAAGATGCCAGaaaaaaaTGACCTGTTAGCCGCCATTCTCGCGGCAAAGGA 37935 ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 178 GTAAGACATGAAGATGCCAGAAAAACATGACCTGTTGGCCGCCATTCTCGCGGCAAAGGA 237 Query 37936 ACAAGGCATCGGGGCAATCCTTGCGTTTGCAATGG 37970 ||||||||||||||||||||||||||||||||||| Sbjct 238 ACAAGGCATCGGGGCAATCCTTGCGTTTGCAATGG 272 >seq237313 Length=339 Score = 98.7 bits (108), Expect = 3e-16 Identities = 215/317 (68%), Gaps = 14/317 (4%) Strand=Plus/Plus Query 38578 CTGGCTACGGTCAGTATGAACACAAGATCGATAGTCTGATTGCCAAATTCAAAGAAGCTG 38637 |||| || ||||||| || || ||| | || |||||||| |||||||||||||| | Sbjct 1 CTGGTTATGGTCAGTTCGAGCAAAAGGCTAACAGCCTGATTGCAAAATTCAAAGAAGCGG 60 Query 38638 GCGGGGTGGTTAATGAAACTTCGCTATAAGCTG-GTTATTTCTGCTTTCCTCCTGACT-- 38694 |||| ||| | || | | ||| ||| | || | | | || |||| || Sbjct 61 GCGGAACGGTCAGAGAGATTGATGTATGAGCAGAGTCACCGC-GATTATCTCCGCTCTGG 119 Query 38695 TTATTCGGTTCTCTCGTCTG---GTCA------GCTAATCATTACCACAATAAAGCCATT 38745 |||| | || ||||||| |||| | ||||||||||| |||| |||||| Sbjct 120 TTATCTGCATCA-TCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATT 178 Query 38746 GAATACAAAAAACAGCGCGACGAAAACGCTATGGCATTAGATTCGGCTATGGCGACGATC 38805 |||||| ||||||||| |||| || | | | | | ||| | ||| | || Sbjct 179 ACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATT 238 Query 38806 TCTGATATGCAGAAGCGTCAACGTGACGTAGCAGAACTCGATGCCAGATATACAAAGGAG 38865 |||| ||||||| |||||| ||||| || || | |||||||| | ||| || |||||| Sbjct 239 ACTGACATGCAGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAG 298 Query 38866 CTTGCTGATGCTAACGC 38882 | ||||||||||| || Sbjct 299 TTAGCTGATGCTAAAGC 315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132393373015320