Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25]
237,614 sequences; 309,419,125 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq24004 181 5e-41
>seq24004
Length=11461
Score = 181 bits (200), Expect = 5e-41
Identities = 272/384 (71%), Gaps = 2/384 (1%)
Strand=Plus/Minus
Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981
|| ||| | | |||||| | |||||| ||||| | |||||||| | ||||| ||||||
Sbjct 8775 TCTACTCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTC 8716
Query 25982 ATTTCTTCTTTTCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCA 26040
|||||||| || || ||| ||||| |||| ||| ||||| ||||| ||||| | |||||
Sbjct 8715 ATTTCTTCCTTACCTGTG-TTCTTCTTTAAATCCAAGAATTCAAATATATCCGCATGCCA 8657
Query 26041 TGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCT 26100
|| |||||||| || ||||| || | ||| ||||||||||||||| |||||
Sbjct 8656 AGGCTCTAAATAAATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATCT 8597
Query 26101 TGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCT 26160
||||| | || | ||| |||||||||| |||| ||| |||| | || || ||||
Sbjct 8596 GGCAGTATTGTTATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCC 8537
Query 26161 ATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCA 26220
| || | || || | ||| || || | ||| | ||| || |||||||| |
Sbjct 8536 AGCTATGTAAGAACCCTGAGCTCTGATGCAATGTGTATGTAAACCTATGCCACCAGCAGA 8477
Query 26221 TTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTT 26280
||| ||||| |||||| | | | ||||| || || |||| |||||||| ||||
Sbjct 8476 TTTAGAAATTAATGCACATTGTTTTAAAGTATCAAAGATACCTTCAATGCTATCGTCTTT 8417
Query 26281 CATTCCTAATAAAAAACAAGAAGA 26304
||| ||| | ||||| || ||
Sbjct 8416 CATAGCTATAAGGAAACAGGAGGA 8393
Score = 129 bits (142), Expect = 3e-25
Identities = 355/530 (67%), Gaps = 18/530 (3%)
Strand=Plus/Minus
Query 24645 CGATATTTT--CTTTTTCTAATGTAAATTGCTTAGCTGATACTGCTGGTTTAGTTC-TAA 24701
|| |||||| |||| |||| ||||| || |||| | |||||||||| || | |||
Sbjct 10018 CGTTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAA 9959
Query 24702 GATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTT 24761
| || |||||||| ||||| ||| | | |||||| ||| ||||| || || || ||||
Sbjct 9958 G-TAGTACATTCCTGTTTTTAATCCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTT 9900
Query 24762 TTGCAATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGGCAAACAAAACGTT 24821
|| || ||| | | | | | | ||| | |||||| |||| | |||| |
Sbjct 9899 TTCCATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTC 9840
Query 24822 GTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATATCGTAAGCTGTTTTGTATC 24881
|||||| || || | | ||| ||||||| || || || | | ||||||||
Sbjct 9839 CTCTATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACA 9780
Query 24882 TCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTGATCCATT-TTCTCTC-AA 24939
||| |||| || | ||||| || |||| | ||| | |||||||| || | | ||
Sbjct 9779 AATCTCTTATTTCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAA 9720
Query 24940 TA-GATTCAATCTCATATTCGGTGTCCAAAGATTAATTTTT--TCAAGATCTCTAATCAA 24996
|| |||| | |||||| || ||| | | | | |||| ||| | | |
Sbjct 9719 TAAGATT---TTTCATAT-CGTCATCCCACAAATCAGCCCGAGTCAA-ATCAGTCAGAAG 9665
Query 24997 GTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTGATAA--GTTTGAA 25054
|| | || | | | |||||||||||| || |||||||| ||| ||| |||||
Sbjct 9664 ATGATGGTTCACTACAGGAAATTCTCCAGATAAGACTCTTCT--TTGGTAAATATTTGAT 9607
Query 25055 GTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATT 25114
|| || ||||||||| ||||| | || || | ||||| | |||||| || || |||||
Sbjct 9606 GTAAAGGGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATA 9547
Query 25115 AATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTT 25164
||||| ||||| ||||| | |||||||| ||| | |||| || |||
Sbjct 9546 GGAGCTATCAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTT 9497
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 252307216245050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |