Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq24004 181 5e-41 >seq24004 Length=11461 Score = 181 bits (200), Expect = 5e-41 Identities = 272/384 (71%), Gaps = 2/384 (1%) Strand=Plus/Minus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 || ||| | | |||||| | |||||| ||||| | |||||||| | ||||| |||||| Sbjct 8775 TCTACTCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTC 8716 Query 25982 ATTTCTTCTTTTCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCA 26040 |||||||| || || ||| ||||| |||| ||| ||||| ||||| ||||| | ||||| Sbjct 8715 ATTTCTTCCTTACCTGTG-TTCTTCTTTAAATCCAAGAATTCAAATATATCCGCATGCCA 8657 Query 26041 TGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCT 26100 || |||||||| || ||||| || | ||| ||||||||||||||| ||||| Sbjct 8656 AGGCTCTAAATAAATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATCT 8597 Query 26101 TGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCT 26160 ||||| | || | ||| |||||||||| |||| ||| |||| | || || |||| Sbjct 8596 GGCAGTATTGTTATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCC 8537 Query 26161 ATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCA 26220 | || | || || | ||| || || | ||| | ||| || |||||||| | Sbjct 8536 AGCTATGTAAGAACCCTGAGCTCTGATGCAATGTGTATGTAAACCTATGCCACCAGCAGA 8477 Query 26221 TTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTT 26280 ||| ||||| |||||| | | | ||||| || || |||| |||||||| |||| Sbjct 8476 TTTAGAAATTAATGCACATTGTTTTAAAGTATCAAAGATACCTTCAATGCTATCGTCTTT 8417 Query 26281 CATTCCTAATAAAAAACAAGAAGA 26304 ||| ||| | ||||| || || Sbjct 8416 CATAGCTATAAGGAAACAGGAGGA 8393 Score = 129 bits (142), Expect = 3e-25 Identities = 355/530 (67%), Gaps = 18/530 (3%) Strand=Plus/Minus Query 24645 CGATATTTT--CTTTTTCTAATGTAAATTGCTTAGCTGATACTGCTGGTTTAGTTC-TAA 24701 || |||||| |||| |||| ||||| || |||| | |||||||||| || | ||| Sbjct 10018 CGTTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAA 9959 Query 24702 GATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTT 24761 | || |||||||| ||||| ||| | | |||||| ||| ||||| || || || |||| Sbjct 9958 G-TAGTACATTCCTGTTTTTAATCCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTT 9900 Query 24762 TTGCAATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGGCAAACAAAACGTT 24821 || || ||| | | | | | | ||| | |||||| |||| | |||| | Sbjct 9899 TTCCATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTC 9840 Query 24822 GTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATATCGTAAGCTGTTTTGTATC 24881 |||||| || || | | ||| ||||||| || || || | | |||||||| Sbjct 9839 CTCTATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACA 9780 Query 24882 TCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTGATCCATT-TTCTCTC-AA 24939 ||| |||| || | ||||| || |||| | ||| | |||||||| || | | || Sbjct 9779 AATCTCTTATTTCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAA 9720 Query 24940 TA-GATTCAATCTCATATTCGGTGTCCAAAGATTAATTTTT--TCAAGATCTCTAATCAA 24996 || |||| | |||||| || ||| | | | | |||| ||| | | | Sbjct 9719 TAAGATT---TTTCATAT-CGTCATCCCACAAATCAGCCCGAGTCAA-ATCAGTCAGAAG 9665 Query 24997 GTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTGATAA--GTTTGAA 25054 || | || | | | |||||||||||| || |||||||| ||| ||| ||||| Sbjct 9664 ATGATGGTTCACTACAGGAAATTCTCCAGATAAGACTCTTCT--TTGGTAAATATTTGAT 9607 Query 25055 GTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATT 25114 || || ||||||||| ||||| | || || | ||||| | |||||| || || ||||| Sbjct 9606 GTAAAGGGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATA 9547 Query 25115 AATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTT 25164 ||||| ||||| ||||| | |||||||| ||| | |||| || ||| Sbjct 9546 GGAGCTATCAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTT 9497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252307216245050