Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq14972 167 7e-36 seq24004 134 4e-26 seq53620 125 2e-23 seq20520 87.8 5e-12 >seq14972 Length=8078 Score = 167 bits (184), Expect = 7e-36 Identities = 340/497 (68%), Gaps = 10/497 (2%) Strand=Plus/Plus Query 288849 CCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGC 288908 ||||||||| ||||||| | ||| ||| |||||| || || ||||||| || || Sbjct 6572 CCTATCAAATCTACCAGGCCTTAATAAGGCTTTGTCTAAAATGTCCACTCTGTTAGTAGC 6631 Query 288909 TGCCAATACAACAATAGATTCGGT-TTGC-TTAAATCCATCCATACTTGTTAAAATTTGA 288966 || ||||| |||| | || | | ||| || || |||||||| || || ||| Sbjct 6632 AGCTAATACTACAACA--TTGGTTGTTGTATTGAAACCATCCATTTCCACTAGAAGCTGA 6689 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttt 289026 ||||| || | ||| ||| || ||||| || | | | || ||| ||||| Sbjct 6690 TTAAGAGTATTTTCTTGTTCTGAATG---ACCTCCAAAA-CTTCTGCCTC-CTC-TTTTT 6743 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 ||||||||||||| ||||| ||||| || | | ||| |||| || || | || ||| Sbjct 6744 CTACCAACAGCATCTATTTCATCAATAAATAATATACATGGAGCATGTTTCCGTGCCATT 6803 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 | || | || || || | || | |||| ||||||| ||||||||| ||| || ||| Sbjct 6804 GAGAACATATCCCTGACCCTAGAGGGACCAACACCAACAAACATTTCTAAAAACTCGGAA 6863 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | |||||| ||| || | ||||| || || || ||| ||| | || ||||| || Sbjct 6864 CCTGATACTGTAATAAAGGGAACATTAGCCTCTCCAGCTGTTGCTTTAGCTAGAAGAGTT 6923 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC 289266 ||||| |||||||| ||||| ||||| ||||||| || | ||| || || | Sbjct 6924 TTACCAGTTCCAGGGGGTCCTGTTAATAAGGCTCCCTTAGGAATTTTAGCTCCTAAATCA 6983 Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 |||||| || |||| |||| || || | |||| |||| || |||| ||| || || Sbjct 6984 ATATATTGCTGAGGGTTCTTCAAGAAATTGACAAATTCCATAATTTCAATTTTAGCTTCC 7043 Query 289327 TCACATCCTGCTACATC 289343 ||||| || || || || Sbjct 7044 TCACAACCAGCAACGTC 7060 >seq24004 Length=11461 Score = 134 bits (148), Expect = 4e-26 Identities = 578/899 (64%), Gaps = 36/899 (4%) Strand=Plus/Minus Query 155475 GGGTAAAAATTCACATCAATAATGTTATTTAAATTT---GTAACCAATACCTTGGTTACG 155531 || |||||||| |||||||||| || ||||||||| || || ||| ||| || | Sbjct 9204 GGATAAAAATTAACATCAATAACTTTGTTTAAATTTTGAGTTAC-AAT--CTTTGTGATT 9148 Query 155532 TCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACCAAGACCAATA 155591 ||| |||||| | | | |||| | |||| ||| |||||||| ||| | || Sbjct 9147 TCTTTTAATTTTTTAAAATTAAATCTGTTATTTTCA---ACAAACATGTTAAGTGCTATG 9091 Query 155592 GACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCAC 155651 || || || || || || || || | || |||||| |||| |||| ||| Sbjct 9090 GAAGCAAGGTTGCACACTGCCACTTCATCTTCTGAAGTGTATTGCACAACCTCAGTGCAA 9031 Query 155652 AGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCC 155711 || || || || || ||||| | ||| || || ||| || ||||||||||||||| Sbjct 9030 AGATTGCTACATTTAATAGTGCCAAGATTTTTTTGATTACTCTTTCTGTTACAAGCATCC 8971 Query 155712 TTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT---CTTTAGCCAG 155768 || || | |||||||| || || ||||||| || || || | ||| ||| ||| Sbjct 8970 TTATACAACATGTATGGTGTACCAGTCTCCACTTGGGCTTCTATAATTGACTT---CCAT 8914 Query 155769 AGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTT--CATATACA 155826 | || | || | | ||| || | ||| ||| |||||||| |||||| Sbjct 8913 AACTCTTGAGCTCTGACTTGTTTTATAAATCGTTTTTCTTCTTCATATTTGGCATATA-- 8856 Query 155827 GCGTTCGGTAA--TCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAA 155884 ||||| || ||||| || | || ||| || ||||| || | || || || | Sbjct 8855 --GTTCGTCAAATTCCTCTCCAAAGCAGTCAGCGAGGCCAGGACAATCATGAGGACACAT 8798 Query 155885 CAGCGACCAAATTTTATTACCGAT--TACACGCTCCATAAATACATCACTCGCCCAAATA 155942 || ||||| || || || | ||| | | |||||| | ||| ||| | | Sbjct 8797 GAGACTCCAAACTTCAT--CCTTTTCTACTCTTTTCATAAACAGATCTGGTATCCATAAA 8740 Query 155943 GCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC-GTGATTCTTCCGTAGCTCTAA 156001 ||||| || || || || || | || || | || ||| |||||| || || || Sbjct 8739 GCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTACCTGTG-TTCTTCTTTAAATCCAA 8681 Query 156002 GAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACC---ATTCCT 156058 |||||| ||||| | ||| ||||| | ||| || ||||| || | | Sbjct 8680 GAATTCAAATATATCCGCATGCCAAGGCTCTAAATAAATTGCAAATGCGCCGGGACGTTT 8621 Query 156059 CTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAAT 156118 || ||||| ||||||||||| | ||||| || || | || | | ||| || | | Sbjct 8620 GTTTCCACCTTGATCTACATATCTGGCAGTATTGTTATACACTCTCAACATTGGCACTAG 8561 Query 156119 ACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACAT--TATGA 156176 |||||| || ||||| || || || | ||||| ||||| || ||| Sbjct 8560 ACCATTTGAGACCCCATTAGTGCCAGCTATGTAAGAACC--CTGAGCTCTGATGCAATGT 8503 Query 156177 ATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTG 156236 |||||| || || ||||| | ||||||||||| || |||| |||| ||||| Sbjct 8502 GTATGTAAACCTATGCCACCAGCAGATTTAGAAATTAATGCACATTGTTTTAAAGTATCA 8443 Query 156237 AAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGT 156296 || ||||||||||| ||| |||| ||| | || || | || || | || || Sbjct 8442 AAGATACCTTCAATGCTATCGTCTTTCATAGCTATAAGGAAACAGGAGGAAAGCTGTGGC 8383 Query 156297 CGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACAT 156355 || ||||| | ||| ||| |||||||| ||||||| ||||||| || | ||||| Sbjct 8382 CGCGGTGTGGCTGCGGAGAACAGTGTAGGGCTTGCATGTGTAAAATATTTCTCTGACAT 8324 >seq53620 Length=3460 Score = 125 bits (138), Expect = 2e-23 Identities = 208/295 (71%), Gaps = 8/295 (3%) Strand=Plus/Plus Query 302553 ATCATAACCAATCATAA-TGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAG 302611 ||||||| | ||||| || || ||||| ||| ||||||||||| ||||| ||||||| Sbjct 1859 ATCATAATGTACCATAACTGACT-CCATAGCCTTTATTAAACGACGTTGAATGTAACCAG 1917 Query 302612 TTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGA 302671 || || ||||||||||| |||||||| ||||| ||||||| ||||| || ||||| Sbjct 1918 TTTCAGCAGTTTTTACAGCGGTATCAATGAGACCTTCACGACCTCCCATGGCGTGGAAAT 1977 Query 302672 ATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGG 302731 | | ||| ||| | || ||| | || | || |||||||| | | || | Sbjct 1978 AAAACTCAGAGGGTGTCAAGCCAGCAAGGTAAGAATTTTCGACGAAACCTCTAGATTCTG 2037 Query 302732 G--CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGA 302788 | || ||||||| ||| | || ||||||| || || || | | ||| | || | Sbjct 2038 GACCGTAATCGTC---TTTGATGAAATGTGGCAATGTTCTTTTACGAAAACCGAACGGAA 2094 Query 302789 TACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||||||||| ||||||||||| || || | || | ||| | ||| || || || Sbjct 2095 TACGCTTTCCTTCAACGTTCTGTTGCCCTACACAAGCAATAACCTGTGAGATGTT 2149 >seq20520 Length=7881 Score = 87.8 bits (96), Expect = 5e-12 Identities = 389/598 (65%), Gaps = 25/598 (4%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || || |||||||| |||||| || || | | ||| | |||||| | ||| | || Sbjct 5885 GCTATCAGACCACAGAAATTACAAACGTGAATACGGTACGGATCAGAAACTTCAAAGAGA 5826 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 || | | ||| | | |||||||| | || ||||||||| |||||||| || Sbjct 5825 CGTTCTCTCAAGAACTGTGCGGCACCGTGGGCGATTTGACAATCACGTTCCATTTCCCCA 5766 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACG-AGTGAGATTA--ACC 251580 ||||| | ||| || || ||||| | || || ||| || || | | ||| ||| Sbjct 5765 AAACGCAAACCTCCGTCACGAGCACGCCCTTCCATAGGTTGTCGTACCAAAATTTGTACC 5706 Query 251581 ATAGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 || || | | | ||| || |||| |||||||||||| ||||||||||| Sbjct 5705 ---GGTCCTCTTGCTCTCGAATGAATTTTGTCATCTACCATATGCTTAAGACGCTGGTAA 5649 Query 251641 AATGCGGGACCGATGAAGATGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATA 251700 ||| |||||| | ||| | || | || | |||||| || |||||||||| Sbjct 5648 TATGTGGGACCCAAGAATACTTGCGCATTAATCTTTCGTCCAGTATGACCGTTATACATC 5589 Query 251701 ACTTCGTTTCCATTAGAT-TCATAACCAAGTTTCTGTAGCTCTGAAGCAATAT-CACCAA 251758 |||||||| || | || | ||| || | ||||| |||| ||| | | || Sbjct 5588 ACTTCGTTACC-TCGGAGGTGATAGCCGTACTCTTGTAGTAAAGAAGAAATTTTCTGCA- 5531 Query 251759 TCTTGAAT----TTGCTAAAACTGGTGC--CGTCTCCGTAAAGACCCAT-TTGAATCAAC 251811 | | || | | |||| ||||| |||| ||| ||| | || || | | Sbjct 5530 -CGTTAACGGCATCGTTAAA--TGGTGTTGCGTCACCGATTTCTCCCTTGTTTGATGA-C 5475 Query 251812 ACTTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGG 251871 || || ||| || || ||| || | || ||||||||| || || |||||| Sbjct 5474 ACCTTTCCTTGAATACATTCAATCAAGTGACCAATTGTCATACGAGAAGGGATGGCATGG 5415 Query 251872 GGATTGATGATGATGTCGGGTTTCAGTCCATCAGCA-GTGAAGGGCATATCCTTTTCCTC 251930 ||||| || ||||| || ||| | | || || ||| || || |||||||| | || || Sbjct 5414 GGATTAATAATGATATCTGGTGTTAAGCCCTC-GCATGTAAACGGCATATCTTCTTG-TC 5357 Query 251931 AATAATGT-TTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||| || ||||| ||||| ||||| |||||||||||| |||||||| ||||| Sbjct 5356 GATACTGGATTCCACAGGTTCCTTTTTGACCGTGACGAGAAGCAAACTTATCTCCAAT 5299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1467336755263918