Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq45806 255 5e-63 seq21383 176 4e-39 seq53127 114 1e-20 seq88586 89.7 4e-13 >seq45806 Length=6479 Score = 255 bits (282), Expect = 5e-63 Identities = 373/520 (72%), Gaps = 22/520 (4%) Strand=Plus/Plus Query 103568 AACGGGTTCTTCTACTTGGGCCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGAG 103627 || || |||| || ||||||||||||| ||||| |||||||||||||| ||||| || Sbjct 4832 AATGGCTTCTATTATCTGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAA 4891 Query 103628 ATTATGCGCTGGGAGGAGGGCGACGACCCGGCTCGCGATCATCAGAGGTGGGCGCCGCAG 103687 |||||| |||| | ||||||||| || || || || ||| | |||||||| ||| Sbjct 4892 ATTATGAAATGGGTTGCGGGCGACGATCCCGCCAAGGACCACCAGCGCTGGGCGCCTCAG 4951 Query 103688 TGTCCGTTCCTGaaaaaaaCGGCTG---CTGGC---GCGCTGCCCG---CCG-GCCTTGC 103737 || || ||| || ||| | ||||| | || || || ||| ||| | | Sbjct 4952 TGCCCTTTCTTGCGGCGGCAGGCGGAATCTGGCAACGTGCCGCGCGAGCCCGCGCCCT-C 5010 Query 103738 GATGG-AC-----GGGCAGGACGAGTGCGGCGTGAGCGCGCTGCCGTCCACCAACGCCTG 103791 | ||| || || || ||||||||||||||| |||||| ||| || | ||| | Sbjct 5011 GCTGGCACCCGCTGGCCACGACGAGTGCGGCGTGCGCGCGCCCCCGCCCGC----GCCGG 5066 Query 103792 CGTGC-GCATGCCCGGCCCCGCGCACCCTCGGTTCGCCTCCGAGGCCTCAAGGTTACAAA 103850 || | |||||||||| |||| |||| | || | |||||||||||| | | | | | Sbjct 5067 CGCCCCGCATGCCCGGTCCCGTGCACGCGCGCTACGCCTCCGAGGCGGCCCGCCTGCGCA 5126 Query 103851 CTTTTAAGGATTGGCCCCGGAGTCTGAAACAGAAACCGGAGAAGATGGCCGAAGCCGGAT 103910 || | || ||||| || ||| |||| ||||| || ||| | | |||||||| |||| Sbjct 5127 GCTTCAGCGACTGGCCTCGCAGTATGAAGCAGAAGCCTGAGGAACTCGCCGAAGCGGGAT 5186 Query 103911 TCTACTACACCGGCCACAGCGACAACACGAAATGCTTCTACTGCGACGGTGGTCTAAAGG 103970 ||| |||||||||||| | ||||| || || ||||||||||| ||||| || || |||| Sbjct 5187 TCTTCTACACCGGCCAGGGTGACAAAACTAAGTGCTTCTACTGTGACGGCGGACTCAAGG 5246 Query 103971 ATTGGGAGCACGATGATGAGCCGTGGCAACAACACGCGCTTTTCTTTCGCCGTTGCGCAT 104030 | |||||| |||| || | ||||||| | || ||||||| | || ||| ||||| | Sbjct 5247 ACTGGGAGAACGACGACGTGCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGGTGCGCCT 5306 Query 104031 ACGTGCTACTTGTCAAGGGCCACGATTATGTACAAAAGGT 104070 |||||| || ||||| |||| || || || || ||||| Sbjct 5307 ACGTGCAGCTGGTCAAAGGCCGAGAGTACGTCCAGAAGGT 5346 >seq21383 Length=8822 Score = 176 bits (194), Expect = 4e-39 Identities = 641/992 (65%), Gaps = 31/992 (3%) Strand=Plus/Plus Query 29072 TGCGTATTTTGTAGAATGGGGCGTATATGGCCGCAACTTTCCGGTAGACAAAGTGCCGCT 29131 ||| || || ||||||||||| || ||| | || || || || || | || | Sbjct 1093 TGCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATACCTAT 1152 Query 29132 GCCCAACCTCTCGCATCTGTTGTACGGTTTCATACCTATTTGCGGCGGCGACGGGCTCAA 29191 || || || | ||| || | ||||| || || || ||||||||||| ||||| |||| Sbjct 1153 ACCTAATCTTACTCATTTGCTCTACGGCTTTATTCCAATTTGCGGCGGTGACGGCATCAA 1212 Query 29192 CGACGCCCTCAAAACCATTCCCGGCAGTTTTGAGGCGCTGCAACGCTCTTGCAAGGGCCG 29251 || | ||| || |||||||| | || || || || || || | ||||| Sbjct 1213 TGATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGATCCTGTAGCGGCCG 1272 Query 29252 TTCAGATTTCAAAGTCGCTATTCACGATCCGTGGGCCGCGATACAAAAACCGCAAAAGGG 29311 | || ||||||||| | || |||||||| ||||| || |||||||||| ||||| || Sbjct 1273 TGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGG 1332 Query 29312 CGTGTCTGCGTGGAACGAGCCCTACAAAGGAAACTTCGGTCAGCTAATGGCGGCCAAGCT 29371 ||||| | |||||||||||||||||||| ||||| || || ||||| | || | Sbjct 1333 ATTGTCTTCATGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACA 1392 Query 29372 GGCCAATCCGCACCTCAAAATTCTGCCGTCCATCGGCGGCTGGACATTGTCCGACCC--- 29428 ||| || | | || ||||| || || || || || ||||| | |||| || Sbjct 1393 AGCCCGCCCTGAATTGAAGATTCTTCCATCTATTGGTGGGTGGACGCTTGCCGATCCTTT 1452 Query 29429 GTTCTATTTCATGCACGACGCGGAAAAACGGCGTGTGTTTGTGGACTCGGTCAGAGAATT 29488 |||| ||| | || | | | | | || |||||| | || || | || || Sbjct 1453 CTTCTTTTTAGTTGACAAATCTAAGAGAACACG---ATTTGTGCAGTCAGTAAAGGAGTT 1509 Query 29489 TCTGCAGGTGTGGAAGTTTTTTGACGGCGTGGACATAGACTGGGAGTTTCCGGGTGGCAA 29548 ||| | ||||| || || || || || || || || |||||||| || |||||||| Sbjct 1510 TCTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAA 1569 Query 29549 AGGCGCCAACCC-GACACTTGGCAACGGGGAGCGCGACGCCGACACGTATAACATTTTAC 29607 ||| || ||||| ||| || || | | || || | || ||| | ||| Sbjct 1570 AGGTGCTAACCCTGAC-CTCGGTAGCCCAGA---AGATGGTGATTGTTATGTAAGTTTGA 1625 Query 29608 TAAAGGAATTGCGCGCAATGATGGACGAGTTACAATTGCAAACGGGCAAAACGTACGAGT 29667 | || ||||| || | ||| |||| ||| | | | | || || | ||||| | Sbjct 1626 TGAAAGAATTACGTGAGATGCTGGATGAGCTCTCAGCTAAGAATGGTAAGAAATACGAAT 1685 Query 29668 TGACAAGCGCAATCAGTTCCGGACATGACAAGATTGCTGTAGTTAAATACGACGCTGCGC 29727 | || || || ||| | ||| || || || || ||| | |||| | || | Sbjct 1686 TAACTTCTGCTATTAGTGCTGGATGGGATAAAATCCAAGTTGTTGACTACGGCAAAGCTC 1745 Query 29728 AAAAGTTTCTCGATAAAATATTCCTCATGAGCTACGATTTTAAAGGCGCGTGGTCAAACA 29787 |||| | | | ||| | || ||| | ||||| ||||| || || || || |||||||| Sbjct 1746 AAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTCAAGGGAGCCTGGTCAAA-- 1803 Query 29788 CCGAT----TTGGGCTACCAAACTACTCTCTACGCGCCGAGTTGGAACCCAAACGAACTG 29843 ||| |||| | | ||||| | | |||||||| ||||| || || ||| Sbjct 1804 -TGATACTCTTGGAC-ATCAAACGCCATTGTACGCGCCTGCGTGGAATCCCAAGGAAACT 1861 Query 29844 TACAACACGGACCACGCCGTTA---AGTTGCTCACGAACCAGGGCGTGGACCCGCGCAAA 29900 |||| | ||| | || | | ||||| || ||||| ||| | || || Sbjct 1862 TACACATCTGACTTTGGAGTAAAATACTTGCTGGCG---CAGGGAGTGAATCCTAAGAAG 1918 Query 29901 ATTATTGTGGGCGTCGCCATGTACGGCCGCGGTTGGACAGGCGTGTCGGGTTATGACGGT 29960 ||| | || || || || ||||| || || |||||||| ||||| || | || || Sbjct 1919 ATTGTAGTAGGTGTTGCTATGTATGGTCGTGGTTGGACTGGCGT-TC--ATGATTACAAA 1975 Query 29961 GACAACTAT---TTTACGGGCACAGCTGCTGGGCCCGTGACCGGCACTTGGGAAGACGGC 30017 |||||| | || || |||| ||| |||| || || | || |||||| ||||||| Sbjct 1976 GACAACATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGAACTTGGCAAGACGGA 2035 Query 30018 GTTGTCGACTATCGCCAAATTGAAAACGAAAT 30049 || || |||||| | | |||| || ||||| Sbjct 2036 GTGGTTGACTATAGGGAGATTGCGAATGAAAT 2067 >seq53127 Length=7988 Score = 114 bits (126), Expect = 1e-20 Identities = 177/252 (70%), Gaps = 12/252 (5%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||||||||| || || | || ||||| || || || | ||| ||| ||| Sbjct 6281 AATGCAAATTTTTGTTAAGACACTGACTGGCAAGACTATCACTTTGGAAGTGGAAGCTTC 6340 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || ||| ||| ||| |||||||| || | ||| ||||| Sbjct 6341 TGATACAATTGAAAATGTTAAAGCAAAAATTCAGGATAAAGAGGGTATTCCCCCAGATCA 6400 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACT 107730 ||| |||||||||| ||| || || ||||| || |||||| ||| | | |||| Sbjct 6401 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGC----ACACTATCTGACT 6456 Query 107731 ACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATA 107790 |||| ||||| ||||| || || |||||| |||| || | ||| |||| || ||| Sbjct 6457 ACAATATTCAGAAGGAATCAACTTTGCACCTGGTACTGCGGTTGAGAGGTGG----AATG 6512 Query 107791 AAAATATTTGTA 107802 ||||||||||| Sbjct 6513 CAAATATTTGTA 6524 Score = 102 bits (112), Expect = 6e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| ||||| || || | || |||||||| || || | ||| ||| ||| Sbjct 6053 AATGCAAATATTTGTAAAGACACTGACTGGCAAAACTATCACATTGGAAGTGGAAGCTTC 6112 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || || ||| ||| || ||||||||| | || || || Sbjct 6113 TGATACAATAGAAAATGTTAAGGCAAAAATTCAAGACAAAGAAGGCATTCCTCCTGACCA 6172 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| ||||||| ||| || ||||||||||| || | ||| || | || || || Sbjct 6173 ACAGAGGCTTATTTTTGCAGGAAAACAGCTGGAAGATGGACGTACACTGTCAGATTATAA 6232 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||||||||| ||||| |||||| ||||| || Sbjct 6233 TATTCAAAAGGAATCTACTTTGCACTTGGTGCTG 6266 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || || ||||||||||| || |||||||| || | ||| ||| ||| Sbjct 5598 ATGCAAATCTTCGTAAAAACTTTAACTGGGAAAACCATCACATTGGAAGTGGAAGCTTCT 5657 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | ||||| ||||||| || || |||||| | || ||||| Sbjct 5658 GATACAATCGAAAACGTAAAGGCAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAA 5717 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||||| |||| || || || || |||| || | ||| || | ||||| || Sbjct 5718 CAAAGACTAATTTTCGCCGGAAAGCAATTGGAAGATGGGCGCACACTGTCAGACTATAAT 5777 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || ||||| ||||| |||||| | || ||| Sbjct 5778 ATCCAGAAGGAATCTACTTTGCACTTAGTTTTG 5810 Score = 93.3 bits (102), Expect = 3e-14 Identities = 169/246 (69%), Gaps = 10/246 (4%) Strand=Plus/Plus Query 107543 TAAGAGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGA 107602 |||||||| || ||||||||||||| || || | || || ||||| || || | || Sbjct 7183 TAAGAGGTGGAA--TGCAAATTTTTGTAAAGACACTGACTGGGAAAACTATCACTTTGGA 7240 Query 107603 AACGGAGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGT 107662 | ||| ||| ||||| | | | || || ||||||| ||||| |||||| | Sbjct 7241 AGTGGAAGCTTCTGATACAATAGAAAATGTTAAGGCAAAGATTCAAGATAAGGAAGGCAT 7300 Query 107663 GCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAA 107718 || ||||| || ||||| |||| || || || || ||||| |||||| | Sbjct 7301 TCCTCCAGATCAACAAAGACTGATTTTCGCTGGAAAGCAACTGGAAGATGGACGC----A 7356 Query 107719 CAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAG 107778 || || ||||||| || || || ||||||||||| ||||| | || ||| | | ||| Sbjct 7357 CATTGTCGGACTATAATATCCAGAAGGAGTCTACTTTGCATTTAGTTTTGCGTCTAAGAG 7416 Query 107779 GGGGAA 107784 | |||| Sbjct 7417 GTGGAA 7422 Score = 91.5 bits (100), Expect = 1e-13 Identities = 172/252 (68%), Gaps = 12/252 (5%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||| || || || | || ||||| || || || | ||| ||| || Sbjct 5825 AATGCAAATTTTCGTAAAGACACTGACTGGCAAGACTATCACTTTGGAAGTTGAGCCTTC 5884 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || ||| ||| ||| |||||||| || | ||| ||||| Sbjct 5885 TGATACAATTGAAAATGTTAAAGCAAAAATTCAGGATAAAGAGGGAATTCCCCCAGATCA 5944 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACT 107730 ||| |||||||||| ||| || || ||||| || |||||| ||| | | || | Sbjct 5945 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGC----ACACTATCTGATT 6000 Query 107731 ACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATA 107790 |||||||||| || || ||||| |||||| | || | | || |||| || ||| Sbjct 6001 ACAACATTCAGAAAGAATCTACTTTGCACCTAGTACTACGGCTGAGAGGTGG----AATG 6056 Query 107791 AAAATATTTGTA 107802 ||||||||||| Sbjct 6057 CAAATATTTGTA 6068 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/233 (68%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| ||||| || || || ||||| || || | ||| ||| ||| Sbjct 6966 ATGCAAATTTTTGTGAAAACATTGACTGGGAAAACTATCACTTTGGAAGTGGAAGCTTCT 7025 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || ||||||| || || |||||| | || || || Sbjct 7026 GATACAATAGAAAATGTTAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGACCAA 7085 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACTA 107731 || ||||| |||| || || || || ||||| |||||| ||| || | ||||| Sbjct 7086 CAAAGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGC----ACATTGTCAGACTA 7141 Query 107732 CAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || || || ||||||||||| ||||| | || ||| | | |||| |||| Sbjct 7142 TAATATCCAGAAGGAGTCTACTTTGCATTTAGTTTTGCGTCTAAGAGGTGGAA 7194 >seq88586 Length=4530 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||| ||||| || | || || |||||||||||| |||| |||||| Sbjct 2406 AATGCAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTCGAGGTGGAGGCCTC 2347 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | || ||| || || ||||| ||||| | || || || Sbjct 2346 TGATACTATAGAAAATGTTAAAGCTAAAATCCAAGATAAGGAAGGTATTCCACCAGACCA 2287 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| | | || | ||| |||||||| || || || | ||| || | |||||||| Sbjct 2286 GCAACGTTTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTGTCTGACTACAA 2227 Query 107735 CATTCAAAAGGAGTCTACGTTGCA 107758 |||||||||||| || || ||||| Sbjct 2226 CATTCAAAAGGAATCCACATTGCA 2203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397721684448046