Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq20520 93.3 5e-14 seq53620 82.4 1e-10 >seq20520 Length=7881 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/194 (73%), Gaps = 10/194 (5%) Strand=Plus/Plus Query 192926 AACGGAAACAGTATCTCATACATTAAATTATCCACAAAAACCCCTTGTTACCACA-GATA 192984 || ||| ||| || | ||| | | |||||||||| || ||||| || || ||| ||| Sbjct 4737 AATGGATACATTAGCCCATGTACTCTATTATCCACATAAGCCCCTGGTCACAACACGATC 4796 Query 192985 T-TGCAAAATTTAATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATA 193043 | || || ||||| | ||||| || | || |||||| ||| |||||||||| || Sbjct 4797 TATGGAATATTTACGAT-TTAGA-GAGTTGCCTGCTGGTATCAATTCTATTGTTGCAATT 4854 Query 193044 GCTTGCTATACTGGTTATAATCAAGAAGACAGTATTATTTTAAATAAAGCTT---CTATT 193100 || || ||||| || ||||||||||| ||| | ||||||||| |||| || || Sbjct 4855 TTATGTTACACTGGATACAATCAAGAAGATAGTGTCATTTTAAAT---GCTTCAGCTGTT 4911 Query 193101 GAAAGAGGATTATT 193114 ||||||||||| || Sbjct 4912 GAAAGAGGATTCTT 4925 >seq53620 Length=3460 Score = 82.4 bits (90), Expect = 1e-10 Identities = 85/109 (78%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 51957 ACATTTAAAATGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAA 52016 |||||| ||||||||| | ||| |||| |||||||||||||| || || ||| Sbjct 3046 ACATTTCGTATGAATTTGAGTTGCACTTCGCCATACAATGCTGATTTTGACGGCGACGAA 2987 Query 52017 ATGAATTTACATGTTCCTCAATCATATGG-AGCTACTGCTGAATTACAA 52064 |||||||||||||| |||||||| ||||| | || ||||||| || || Sbjct 2986 ATGAATTTACATGTACCTCAATC-TATGGAAACTCGTGCTGAAGTAGAA 2939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633291011371920