Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq18229 96.9 6e-15 seq53127 91.5 3e-13 >seq18229 Length=13825 Score = 96.9 bits (106), Expect = 6e-15 Identities = 108/143 (76%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 182419 CAGGTAGACGCTCACAATATAGTACCTTGTTGGGAAGCTTCTGACAAAGAAGAATACGGT 182478 |||||||| ||||||||| | || || ||||||| |||||||| ||| | ||||| Sbjct 5438 CAGGTAGATGCTCACAATGTGGTGCCATGTTGGGTGGCTTCTGATAAACAGGAATATTCA 5379 Query 182479 GCAAGAACTTTAAGAAAAAAGATATTTGATAAGTTATATGAATATATGACAGAATTTCCT 182538 |||||||| ||||||| || || | ||| ||| |||||||| | |||||||||||| Sbjct 5378 GCAAGAACAATAAGAAATAAAATCAATTCTAAATTAGATGAATATCTCACAGAATTTCCT 5319 Query 182539 ---GTTATACGTAAACACCCATA 182558 ||||| |||||| || || Sbjct 5318 CCAGTTAT---TAAACATCCTTA 5299 >seq53127 Length=7988 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/140 (74%), Gaps = 11/140 (8%) Strand=Plus/Minus Query 81643 CAGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------ 81696 || |||| |||||||||| |||||||| || || || || | | ||||| || Sbjct 5798 CAAAGTAGATTCCTTCTGGATATTATAGTCTGACAGTGTGCGCCCATCTTCCAATTGCTT 5739 Query 81697 -----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGC 81751 | || ||||||||||||||| ||||| | || ||||||| |||||||||||||| Sbjct 5738 TCCGGCGAAAATTAGTCTTTGTTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTGC 5679 Query 81752 TTTTATATTTTCAATCGTAT 81771 |||| ||||| || |||| Sbjct 5678 CTTTACGTTTTCGATTGTAT 5659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 900727910639040