Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq21383 194 2e-44 seq53127 104 2e-17 seq44559 102 8e-17 seq24004 100 3e-16 seq47412 82.4 7e-11 >seq21383 Length=8822 Score = 194 bits (214), Expect = 2e-44 Identities = 773/1202 (64%), Gaps = 31/1202 (3%) Strand=Plus/Plus Query 24794 GTGGCGGCGTACTTTGTCGAGTGGGGTGTGTACCCGCGCCAGTTTCCCGTCGACAAGGTG 24853 |||| || ||||| || || |||||||| || || | | || ||||| || | Sbjct 1088 GTGGGTGCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATA 1147 Query 24854 CCCGCGCCCAACCTCTCGCACTTGCTCTACGGCTTTGTGCCCATCTGCGGCGGCGCGGGC 24913 || || || || | || ||||||||||||||| | || || |||||||| | ||| Sbjct 1148 CCTATACCTAATCTTACTCATTTGCTCTACGGCTTTATTCCAATTTGCGGCGGTGACGGC 1207 Query 24914 ATCAACGATGCGCTAAAAACTGTGCCGGGCAGCTTCGAGGCGCTGCAACGATCGTGCGCC 24973 ||||| ||| ||||| | ||||| ||| | || || || ||||| || | Sbjct 1208 ATCAATGATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGATCCTGTAGC 1267 Query 24974 GGCCGCGCCGACTTCAAGGTGGCCATCCACGATCCGTGGGCGGCCATACAGAAACCGCAG 25033 ||||| | |||||||| || | ||||||||||| ||||| || |||| ||||| || Sbjct 1268 GGCCGTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAA 1327 Query 25034 AAAGGCGTGTCCGCGTGGAACGAGCCGTACAAGGGCAACTTTGGCCAGCTGATGGCGCTG 25093 ||||| |||| | ||||||||||| ||||| |||||||||||||| | ||| | || Sbjct 1328 AAAGGATTGTCTTCATGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTA 1387 Query 25094 AAGCGCGCCTACCCGCACCTCAAAGTGCTGCCCTCGATCGGCGGCTGGACGCTGTCCGAC 25153 || | ||| ||| | | || | || || || || || || |||||||| |||| Sbjct 1388 AAACAAGCCCGCCCTGAATTGAAGATTCTTCCATCTATTGGTGGGTGGACGCTTGCCGAT 1447 Query 25154 CCGTTCTTCCACATGCACGACAAGGCGGCGCGCCAGACG-TTTATCGACTCGGTGCAAGA 25212 || |||||| | ||||| | | | | ||| ||| | | || || | || Sbjct 1448 CCTTTCTTCTTTTTAGTTGACAAATCTAAGAG-AACACGATTTGTGCAGTCAGTAAAGGA 1506 Query 25213 GTACCTCGTCACCTGGAAGTTCTTTGACGGCGTCGACCTCGATTGGGAGTTTCCCGGCGG 25272 || || | || ||||| ||||| || || || || ||||||||||||| || || || Sbjct 1507 GTTTCTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGG 1566 Query 25273 CAAGGGCGCCAACCCGGACGTGGGCAACGCCGAGCGCGATCGCGCCACCTACACTACCCT 25332 ||| || || ||||| ||| | || | ||| || ||| | | || | | Sbjct 1567 CAAAGGTGCTAACCCTGACCTCGGTA--GCCCAG-AAGATGGTGATTGTTATGTAAGTTT 1623 Query 25333 GTTGGCGGAGCTGCGCGCGATGCTCGACGCGCTCGGTGCCCACCAAAACCGCCACTACCT 25392 | || || | || | |||||| || | |||| || | | | ||| Sbjct 1624 GATGAAAGAATTACGTGAGATGCTGGATGAGCTCTCAGCTAAGAATGGTAAGAAATACGA 1683 Query 25393 GCTCACTAGCGCGATTAGCGCGGGCAACGACAAGATCGCCGTCGTCGACTACACTGAGGC 25452 | ||| || ||||| || || || || ||| || || |||||| | || Sbjct 1684 ATTAACTTCTGCTATTAGTGCTGGATGGGATAAAATCCAAGTTGTTGACTACGGCAAAGC 1743 Query 25453 GCAAAAGTATCTCGATCTGATATTCCTCATGTCGTACGATTTTAAGGGCGGCTGGTCGCT 25512 ||||| ||| | |||| || ||| | ||| ||||| || ||||| | |||||| Sbjct 1744 TCAAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTCAAGGGAGCCTGGTC--- 1800 Query 25513 CAACGA---GCTCGGTCATCAGACGGCGCTTTACGCGCCCCCGTGGCGGCCCGACGAACC 25569 || || || || ||||| ||| | | |||||||| ||||| ||| | ||| | Sbjct 1801 AAATGATACTCTTGGACATCAAACGCCATTGTACGCGCCTGCGTGGAATCCCAAGGAAAC 1860 Query 25570 GTACTGCGCGGACCGCGCGGTCGAGGCGCTGCTCGCGCAACACGTG---CCCAAGAACAA 25626 ||| | ||| | || | |||| ||||| ||| || ||| || Sbjct 1861 TTACACATCTGACTTTGGAGTAAAATACTTGCTGGCGCAGGGAGTGAATCCTAAG---AA 1917 Query 25627 GATTGTGCTGGGCGTTGCCATGTACGGCCGCGGCTGGACGGGCGT---AGCGAGCGACGA 25683 |||||| | || ||||| ||||| || || || ||||| ||||| | | | || Sbjct 1918 GATTGTAGTAGGTGTTGCTATGTATGGTCGTGGTTGGACTGGCGTTCATGATTACAAAGA 1977 Query 25684 CAGCGACAATCCATTCTTGGGCACCGCCACCGGTCCCGTCCCCGGCACCTGGGAGGACGG 25743 || ||| ||| ||| |||| ||| || || || ||| || || ||| | ||||| Sbjct 1978 CA---ACATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGAACTTGGCAAGACGG 2034 Query 25744 CGTCGTCGACTATCGACAGATTGC---TCACAAC-CTCACG--CAGTACACGTACGCGTA 25797 || || |||||| | ||||||| | | | | |||| | ||| || | || Sbjct 2035 AGTGGTTGACTATAGGGAGATTGCGAATGAAATCGCTCAAGGCAAGTGGGAGTTCCATTA 2094 Query 25798 CGACGACGTTGCCAAGGCGGCGTACATTTATCGCGCATCCGACGG-CAACTTGATTAGCT 25856 |||| | || ||| | || | ||| | | | |||| || | |||| | | || Sbjct 2095 CGACAATGTCGCCCAAGCCCCTTACGTCTTCAGACCATCAACTGGAGATCTTG-TAACCT 2153 Query 25857 ACGACGACGCTGCCTCGGTCACCGCCAAGGCCAAATATGTATTGGACCACGAGCTGGCCG 25916 | || | ||| ||||| | | |||| ||||||||| | || |||| | | Sbjct 2154 ATGATAATGCTAGATCGGTTATTGAAAAGGGTAAATATGTAAGAAATAACAAGCTAGGTG 2213 Query 25917 GTCTGTTTGCCTGGGAAATTGACGCCGACAACGGTGACCTGCTCAACGCCATGAACAAGG 25976 |||| ||||| |||||| | ||||| || ||||||||||| || || |||||||||| || Sbjct 2214 GTCTCTTTGCTTGGGAAGTGGACGCTGATAACGGTGACCTACTGAATGCCATGAACATGG 2273 Query 25977 GT 25978 || Sbjct 2274 GT 2275 >seq53127 Length=7988 Score = 104 bits (114), Expect = 2e-17 Identities = 151/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512 ||||||| || || |||||||| |||||||| || || ||| ||| ||||| | Sbjct 6943 AAATGTAAAGTAGATTCTTTCTGAATATTGTAGTCAG--ATAGTGTACGTCCATCCTCAA 6886 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||||| || || |||| |||| || ||||| ||||| ||||||||||| || ||| Sbjct 6885 GCTGCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGAGGAATGCCTTCCTTATC-TTGA 6827 Query 133573 TCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||| | ||| | | || | ||||| | |||||| || || | |||| || ||| Sbjct 6826 ATTTTCGCCTTAACATTTTCGATTGTGTCAGAGGGCTCAACTTCCAGTGTGATAGTCTTG 6767 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || ||||| || || ||||| Sbjct 6766 CCAGTCAGTGTCTTTACAAATATTTGCAT 6738 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || || ||||| ||||| || || || ||| | || || | ||||| || Sbjct 5794 GTAGATTCCTTCTGGATATTATAGTCTGACAGTGTGCGCCCATCTTCCAATTGCTTTCCG 5735 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| |||| || | || || || |||||||||||||||||||| |||||| ||| Sbjct 5734 GCGAAAATTAGTCTTTGTTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTGCCTTT 5675 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | || || | | ||||| || | |||| |||||| || || | |||| Sbjct 5674 ACGTTTTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATGGTTTTCCCAGTTAAAGTT 5615 Query 133644 TTTACGAAAATCTGCATG 133661 |||||||| || |||||| Sbjct 5614 TTTACGAAGATTTGCATG 5597 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| ||||| ||||| || || || ||| | | | || || || Sbjct 7171 AAATGCAAAGTAGACTCCTTCTGGATATTATAGTCTGACAATGTGCGTCCA-TCTTCCAG 7113 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || ||| |||| || | || ||||| ||||| |||||||||||||| || Sbjct 7112 TTGCTTTCCGGCGAAAATCAGTCTTTGTTGGTCTGGAGGAATGCCTTCCTTGTCTTGAAT 7053 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| ||| | | || | || || | | ||||| || | |||| ||||| || Sbjct 7052 CTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGTGATAGTTTTCCC 6993 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||||| || ||||| ||||| Sbjct 6992 AGTCAATGTTTTCACAAAAATTTGCAT 6966 >seq44559 Length=2984 Score = 102 bits (112), Expect = 8e-17 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| |||||||| || | || | | | ||||| ||||||||||| Sbjct 1088 GTGGACTCTTTCTGAATATTGTAGTCAGAGAGAGTACGGCCA-TCCTCCAGCTGCTTGCC 1030 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| ||||||| || || || || || || || || || ||||| |||| || |||| Sbjct 1029 AGCGAAAATGAGACGTTGTTGATCTGGGGGAATACCCTCTTTGTCTTGGATC-TTGGCTT 971 Query 133583 GAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||| | ||| || || || | |||| ||||| || ||||| | Sbjct 970 TAACATTTTCAATAGTGTCTGAGGGTTCAACTTCTAATGTGATAGTTTTCCCTGTCAGTG 911 Query 133642 TTTTTACGAAAATCTGCAT 133660 | ||||| || |||||||| Sbjct 910 TCTTTACAAAGATCTGCAT 892 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||||||||| ||||||||||| || ||| ||| | || || | Sbjct 641 AAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGACAAAGTGCGACCA-TCTTCCAA 583 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || || ||||||| ||||| ||||| || |||||||| ||||| || || Sbjct 582 TTGCTTTCCAGCAAAAATGAGACGCTGTTGGTCTGGGGGGATGCCCTCCTTATC-CTGTA 524 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| || |||| | ||| | ||||| | || || || || | ||| | ||| || | Sbjct 523 TTTTAGCTTTGACATTCTCGATTGTGTCAGATGGTTCTACTTCCAGGGTAATGGTCTTTC 464 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| ||||| || || || ||||| Sbjct 463 CAGTCAATGTTTTGACAAATATTTGCAT 436 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||||||||| |||||||| || || ||| | | | || || || Sbjct 869 AAGTGAAGGGTGGACTCTTTCTGGATATTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAG 811 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || ||| | || || || || || || ||||| || |||||||| || ||| Sbjct 810 TTGCTTACCAGCGAAGATAAGACGTTGTTGATCTGGAGGAATTCCTTCCTTATC-TTGAA 752 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 || |||| | | | |||| ||||| | ||||| || || | || | ||||| | Sbjct 751 TCTTAGCTTTAACATTTTCAATGGTGTCTGAAGGCTCAACTTCCAAAGTTATTGTTTTTC 692 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || || ||||| || || || ||||| Sbjct 691 CAGTAAGTGTTTTGACAAATATTTGCAT 664 >seq24004 Length=11461 Score = 100 bits (110), Expect = 3e-16 Identities = 432/680 (64%), Gaps = 6/680 (1%) Strand=Plus/Minus Query 148311 GTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATG 148370 ||||| |||||||| || || ||||||| | ||| || || || | || || ||||| Sbjct 9606 GTAAAGGGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATA 9547 Query 148371 TACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCC 148430 |||| || || || ||||||||||| | ||| ||| || || || | ||| Sbjct 9546 GGAGCTATCAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTAAGGACAGCC 9487 Query 148431 CAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTA 148490 |||||||| || | || || || |||||| || ||||| || || || |||| Sbjct 9486 CAGTCCCAAAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTT 9427 Query 148491 GCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCC 148550 || || || || | || | |||||| | || | | || | ||| || || || Sbjct 9426 GCTGGACTCCCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCT 9367 Query 148551 TCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCG 148610 || | || || || ||||| || || ||||| ||||| || || ||| Sbjct 9366 TCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCA 9307 Query 148611 CTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCA 148670 |||||||| | || | || | ||||||||| || || | |||||| || || | ||| Sbjct 9306 CTTTCGTAAGATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCA 9247 Query 148671 ATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTC---GAGCGGATAGTGGTTGCGG 148727 || || | ||| | || || || | ||| || || ||||| || Sbjct 9246 ATAGGTCTATGTCTCATATT--TGAAGTTTTTGCT-TCAGGGACAGGATAAAAATTAACA 9190 Query 148728 TCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAA 148787 || || | |||| | ||| | || | |||||| ||| | || |||| Sbjct 9189 TCAATAACTTTGTTTAAATTTTGAGTTACAATCTTTGTGATTTCTTTTAATTTTTTAAAA 9130 Query 148788 TCGTACTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCC 148847 | | ||| || | | | | ||| | || || || || || |||||||| ||| Sbjct 9129 TTAAATCTGTTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCC 9070 Query 148848 GTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACG 148907 ||||| | |||| | || | ||| | ||| |||||||| ||||| || | Sbjct 9069 ACTTCATCTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTG 9010 Query 148908 CCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCG 148967 || | || |||||||| ||||| ||||| || || ||||| |||| |||||| ||| Sbjct 9009 CCAAGATTTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTA 8950 Query 148968 CCAGTTTCCACCTGCGTTTC 148987 ||||| ||||| || | ||| Sbjct 8949 CCAGTCTCCACTTGGGCTTC 8930 >seq47412 Length=1128 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 116473 CACGGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCCGGCGAA 116532 || ||||| ||||||||||||||||| |||| || || ||||||||||| || || Sbjct 738 CATGGCTTTCACGTGCACGAGTTTGGTGACAACACAAATGGCTGCACCTCAGCTGGTCCT 679 Query 116533 CACTTCAACCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCACGTCGGT 116592 |||||||| || ||||||| || | ||| || | | || | || || ||| Sbjct 678 CACTTCAATCCTCTAAAAAAGGACCATGGAGGTCCCGACTCGTCGGTCAGACATGTTGGT 619 Query 116593 GACCTGGGCAACATTGAGGC 116612 ||| |||| ||||||||||| Sbjct 618 GACTTGGGAAACATTGAGGC 599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481984955625360