Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20heurippa_20[genbank_20GCA_5F900067975.1_202017-04-25] 237,614 sequences; 309,419,125 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq24004 190 5e-43 seq53620 123 6e-23 >seq24004 Length=11461 Score = 190 bits (210), Expect = 5e-43 Identities = 431/644 (67%), Gaps = 13/644 (2%) Strand=Plus/Plus Query 110520 TCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAA 110579 || || || ||| ||| || || || ||| ||||||||||| | |||| || | ||| Sbjct 8396 TCCTGTTTCCTTATAGCTATGAAAGACGATAGCATTGAAGGTATCTTTGATACTTTAAAA 8455 Query 110580 GAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGT----ATTCACGTT-CATGATA 110634 || ||| | ||||||||| |||| || || ||| || ||| || ||| | | Sbjct 8456 CAATGTGCATTAATTTCTAAATCTGCTGGTGGCATAGGTTTACATACACATTGCATCAGA 8515 Query 110635 TTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAA 110694 ||||| || | | || || | || || | |||| ||| || || |||| Sbjct 8516 ---GCTCAG--GGTTCTTACATAGCTGGCACTAATGGGGTCTCAAATGGTCTAGTGCCAA 8570 Query 110695 TGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAAT---G 110751 |||| ||||| | ||| | ||||| | |||||| |||||||||| || | | | | Sbjct 8571 TGTTGAGAGTGTATAACAATACTGCCAGATATGTAGATCAAGGTGGAAACAAACGTCCCG 8630 Query 110752 GCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTC 110811 || ||||||| || ||| | || ||||||||| | ||||||||||||||||| || | Sbjct 8631 GCGCATTTGCAATTTATTTAGAGCCTTGGCATGCGGATATATTTGAATTCTTGGATTTAA 8690 Query 110812 GTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTT 110871 || || ||| |||||| ||||| | || | |||||||| | ||||| Sbjct 8691 AGAAGAACACAGGTAAGGAAGAAATGAGAGCTAGAGAACTGTTTTATGCTTTATGGATAC 8750 Query 110872 CAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATC 110931 ||||| | || |||||| | || || | ||| | ||| ||| |||||||||||| Sbjct 8751 CAGATCTGTTTATGAAAAGAGTAGAAAAGGATGAAGTTTGGAGTCTCATGTGTCCTCATG 8810 Query 110932 GTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATG 110991 || |||||| || |||| | |||| | || ||||| || || || | ||||||| Sbjct 8811 ATTGTCCTGGCCTCGCTGACTGCTTTGGAGAGGAATTTGACGAACTATATGCCAAATATG 8870 Query 110992 AAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTG 111051 || ||||| ||| |||||| | ||||||||| | ||| ||| | | Sbjct 8871 AAGAAGAAAAACGATTTATAAAACAAGTCAGAGCTCAAGAGTTATGGAAGTCAATTATAG 8930 Query 111052 AATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAAT 111111 || | ||||| || ||||| || || || || |||||||| ||| | ||| | || Sbjct 8931 AAGCCCAAGTGGAGACTGGTACACCATACATGTTGTATAAGGATGCTTGTAACAGAAAGA 8990 Query 111112 CTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 |||||||| ||| | || || ||||| | ||| ||| | ||| Sbjct 8991 GTAATCAAAAAAATCTTGGCACTATTAAATGTAGCAATCTTTGC 9034 >seq53620 Length=3460 Score = 123 bits (136), Expect = 6e-23 Identities = 346/514 (67%), Gaps = 34/514 (7%) Strand=Plus/Minus Query 304988 AAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCA 305047 ||||||||||| || | || |||| ||||| |||||||| || ||||| ||| ||| Sbjct 3457 AAAGGTAAAGAAGGGAGAATCAGAGGAAATCTTATGGGAAAGCGAGTTGACTTTTCTGCC 3398 Query 305048 AGAAGTGTAATCACACCTGATTCTCAAATTA-GTCTTCATGAATTAGGAGTTCCAATTGA 305106 |||| |||||||| |||||| || || ||| || || || || ||||||| || Sbjct 3397 AGAACCGTAATCACTCCTGATCCT-AATTTACGTATTGATCAAGTAGGAGTGCCTCGCTC 3339 Query 305107 AATTGCTTTAAAACTAACATTTCCAGAGAAAGTTA-ACGAGAAAAATATTAAACATTTG- 305164 |||||| ||| ||||||| ||||| ||| | || | || ||| | | || Sbjct 3338 TATTGCTCAAAATTTAACATTCCCAGAACTAGTAACACCATTTAA-TATAGACCGAATGC 3280 Query 305165 AGACGTTGTGTTCTTAATGGAAATAGCA-AGTATCCAGGTGCTCGTGCTGTTATAAAACA 305223 || |||| |||| || |||||| ||| ||||||||||||| |||| | Sbjct 3279 AGGAGTTG-GTTCGTAGGGGAAAT-GCACAGTATCCAGGTGCAAAG-----TATATAGTC 3227 Query 305224 CAAGCAAAAGAAGACA--ATATCTTTGAACCATATCGATTTAAAACAATTCAGTAAAATG 305281 | || || | ||| | ||| | ||| | || || ||| | || ||| || Sbjct 3226 CGAGATAATGGAGAAAGAATAGATCTGAGG--TTTC-ATCCAAAGCCAT-CAG----AT- 3176 Query 305282 CTTGAAATTAATGATATTGTTATCA--------GACATTTGAATGACAATGATTGGGTTC 305333 ||| | ||| |||| |||| | | || |||| ||| |||||| |||| Sbjct 3175 -TTGCATTTACA-ATATGGTTACAAAGTGGAGCGTCACTTGAGAGACGATGATTTGGTTA 3118 Query 305334 TGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTAT 305393 | |||||| | || ||| | |||| |||||| |||||||| ||| | || ||||||| Sbjct 3117 TTTTCAATCGACAGCCAACTTTGCACAAAATGAGTATGATGGGTCACAGGGTGAAAGTAT 3058 Query 305394 TATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTG 305453 | | | | |||||||| | ||| | ||| | |||| || ||||| ||||||| Sbjct 3057 TGCCGTGGTCTACATTTCGTATGAATTTGAGTTGCACTTCGCCATACAATGCTGATTTTG 2998 Query 305454 ATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 | || || ||||||||| | |||||||||||||| Sbjct 2997 ACGGCGACGAAATGAATTTACATGTACCTCAATC 2964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1183199632249054